Detail information of GWHGAAZE015068


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010266287.10PREDICTED: thioredoxin reductase 1-like [Nelumbo nucifera]
Swissprottr|Q39242|TRXB2_ARATH0Thioredoxin reductase 2
trEMBLtr|F6I0C1|F6I0C1_VITVI0Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}
TAIR10AT2G17420.12E-148NADPH-dependent thioredoxin reductase A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2433587924341838-
GWHAAZE00000004mRNA2433587924341838-
GWHAAZE00000004exon2433587924336164-
GWHAAZE00000004exon2434035324340953-
GWHAAZE00000004exon2434150924341838-
GWHAAZE00000004CDS2434150924341838-
GWHAAZE00000004CDS2434035324340953-
GWHAAZE00000004CDS2433609424336164-
GWHAAZE00000004three_prime_UTR2433587924336093-
Transcript Sequence

Network for GWHGAAZE015068

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07992.15Pyr_redox_2113112.70E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00384trxB, TRR Selenocompound metabolism map00450

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0019430biological_processremoval of superoxide radicals
GO:0005737cellular_componentcytoplasm
GO:0016491molecular_functionoxidoreductase activity
GO:0004791molecular_functionthioredoxin-disulfide reductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.161
SRR3591706second leaf2.448
SRR3591707mature leaf1.895
SRR3591708Shoot apex6.275
SRR3591709Stem7.137
SRR3591710White floral bud8.159
SRR3591711White flower13.410
SRR3591712Green floral bud5.733
SRR3591713Yellow flower5.996
SRP173429 SRR8316895Juvenile bud stage 7.592
SRR8316896Juvenile bud stage 12.979
SRR8316897Juvenile bud stage 5.577
SRR8316894Third green stage 2.887
SRR8316900Third green stage 5.907
SRR8316901Third green stage 7.466
SRR8316898Complete white stage 1.480
SRR8316899Complete white stage 4.067
SRR8316903Complete white stage 1.292
SRR8316902Silver flowering stage4.393
SRR8316904Silver flowering stage6.368
SRR8316905Silver flowering stage3.588
SRR8316906Gold flowering stage 10.742
SRR8316907Gold flowering stage 11.048
SRR8316908Gold flowering stage 12.062
SRP132670SRR6706286Control5.271
SRR6706287Light intensity 50%5.226
SRR6706288Light intensity 20%5.192
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.832
CNS0095593Slightly white alabastrum(diploid) 210.772
CNS0095594Slightly white alabastrum(diploid) 320.628
CNS0095595Whole white alabastrum(diploid) 27.658
CNS0095596Whole white alabastrum(diploid) 37.932
CNS0095597Whole white alabastrum(diploid) 45.336
CNS0095598Silvery flower (diploied) 11.871
CNS0095599Silvery flower (diploied) 22.045
CNS0095600Silvery flower (diploied) 33.505
CNS0095601Golden flower (diploid) 11.969
CNS0095602Golden flower (diploid) 22.946
CNS0095603Golden flower (diploid) 32.310
CNS0095604Slightly white alabastrum(tetraploid) 19.800
CNS0095605Slightly white alabastrum(tetraploid) 212.305
CNS0095606Slightly white alabastrum(tetraploid) 36.489
CNS0095607Whole white alabastrum(tetraploid) 15.015
CNS0095608Whole white alabastrum(tetraploid) 23.982
CNS0095609Whole white alabastrum(tetraploid) 34.906
CNS0095610Silvery flower (tetraploid) 14.762
CNS0095611Silvery flower (tetraploid) 23.399
CNS0095612Silvery flower (tetraploid) 311.487
CNS0095613Golden flower (tetraploid) 14.375
CNS0095614Golden flower (tetraploid) 22.868
CNS0095615Golden flower (tetraploid) 31.488
CRA001975CRR073297Stem 17.104
CRR073298Stem 27.450
CRR073299Stem 36.979
CRR073300Leaf 15.301
CRR073301Leaf 26.802
CRR073302Leaf 38.465
CRR073303Juvenile bud 13.408
CRR073304Juvenile bud 23.450
CRR073305Juvenile bud 34.535
CRR073306Third green 115.313
CRR073307Third green 217.408
CRR073308Third green 316.023
CRR073309Second white 111.498
CRR073310Second white 210.256
CRR073311Second white 38.658
CRR073312Silver flowering 14.450
CRR073313Silver flowering 23.311
CRR073314Silver flowering 34.384
CRR073315Gold flowering 14.685
CRR073316Gold flowering 25.525
CRR073317Gold flowering 33.980
CRR073318Tawny withering 18.253
CRR073319Tawny withering 26.451
CRR073320Tawny withering 38.813