Detail information of GWHGAAZE015056


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01760.17.4482E-171unnamed protein product [Coffea canephora]
Swissprottr|Q9M060|IF62_ARATH1E-167Eukaryotic translation initiation factor 6-2 {ECO:0000255|HAMAP-Rule:MF_03132}
trEMBLtr|A0A068TZR3|A0A068TZR3_COFCA3E-171Eukaryotic translation initiation factor 6 {ECO:0000256|HAMAP-Rule:MF_03132}
TAIR10AT3G55620.13E-132Translation initiation factor IF6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2395498823958749-
GWHAAZE00000004mRNA2395498823958749-
GWHAAZE00000004exon2395498823955245-
GWHAAZE00000004exon2395597623956086-
GWHAAZE00000004exon2395652423956654-
GWHAAZE00000004exon2395753023957574-
GWHAAZE00000004exon2395770123957786-
GWHAAZE00000004exon2395852823958624-
GWHAAZE00000004exon2395874023958749-
GWHAAZE00000004CDS2395874023958749-
GWHAAZE00000004CDS2395852823958624-
GWHAAZE00000004CDS2395770123957786-
GWHAAZE00000004CDS2395753023957574-
GWHAAZE00000004CDS2395652423956654-
GWHAAZE00000004CDS2395597623956086-
GWHAAZE00000004CDS2395498823955245-
Transcript Sequence

Network for GWHGAAZE015056

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01912.19eIF-642039.40E-81
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03264EIF6 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0042256biological_processmature ribosome assembly
GO:0043022molecular_functionribosome binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf134.035
SRR3591706second leaf76.840
SRR3591707mature leaf75.935
SRR3591708Shoot apex139.016
SRR3591709Stem164.553
SRR3591710White floral bud126.441
SRR3591711White flower178.148
SRR3591712Green floral bud153.624
SRR3591713Yellow flower120.824
SRP173429 SRR8316895Juvenile bud stage 89.420
SRR8316896Juvenile bud stage 119.509
SRR8316897Juvenile bud stage 60.604
SRR8316894Third green stage 47.196
SRR8316900Third green stage 175.075
SRR8316901Third green stage 155.613
SRR8316898Complete white stage 78.422
SRR8316899Complete white stage 274.925
SRR8316903Complete white stage 98.330
SRR8316902Silver flowering stage80.131
SRR8316904Silver flowering stage93.755
SRR8316905Silver flowering stage44.431
SRR8316906Gold flowering stage 151.167
SRR8316907Gold flowering stage 150.668
SRR8316908Gold flowering stage 193.393
SRP132670SRR6706286Control129.583
SRR6706287Light intensity 50%125.398
SRR6706288Light intensity 20%144.863
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1116.089
CNS0095593Slightly white alabastrum(diploid) 2132.990
CNS0095594Slightly white alabastrum(diploid) 3113.844
CNS0095595Whole white alabastrum(diploid) 2124.401
CNS0095596Whole white alabastrum(diploid) 3109.237
CNS0095597Whole white alabastrum(diploid) 4113.610
CNS0095598Silvery flower (diploied) 1126.558
CNS0095599Silvery flower (diploied) 2119.436
CNS0095600Silvery flower (diploied) 3153.312
CNS0095601Golden flower (diploid) 1114.995
CNS0095602Golden flower (diploid) 2167.443
CNS0095603Golden flower (diploid) 3154.810
CNS0095604Slightly white alabastrum(tetraploid) 1125.021
CNS0095605Slightly white alabastrum(tetraploid) 2121.287
CNS0095606Slightly white alabastrum(tetraploid) 3182.618
CNS0095607Whole white alabastrum(tetraploid) 191.928
CNS0095608Whole white alabastrum(tetraploid) 289.396
CNS0095609Whole white alabastrum(tetraploid) 3140.771
CNS0095610Silvery flower (tetraploid) 1180.703
CNS0095611Silvery flower (tetraploid) 2193.789
CNS0095612Silvery flower (tetraploid) 3192.692
CNS0095613Golden flower (tetraploid) 1125.098
CNS0095614Golden flower (tetraploid) 2142.023
CNS0095615Golden flower (tetraploid) 3166.469
CRA001975CRR073297Stem 1136.310
CRR073298Stem 2126.939
CRR073299Stem 3179.047
CRR073300Leaf 1150.124
CRR073301Leaf 2156.591
CRR073302Leaf 3214.221
CRR073303Juvenile bud 1232.388
CRR073304Juvenile bud 2186.626
CRR073305Juvenile bud 3221.529
CRR073306Third green 1122.492
CRR073307Third green 2120.661
CRR073308Third green 3115.552
CRR073309Second white 1171.129
CRR073310Second white 2109.086
CRR073311Second white 388.413
CRR073312Silver flowering 1106.683
CRR073313Silver flowering 2185.907
CRR073314Silver flowering 3100.517
CRR073315Gold flowering 1176.740
CRR073316Gold flowering 2161.963
CRR073317Gold flowering 3191.434
CRR073318Tawny withering 1164.420
CRR073319Tawny withering 2154.728
CRR073320Tawny withering 3161.196