Detail information of GWHGAAZE015041


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP13571.10unnamed protein product [Coffea canephora]
Swissprottr|Q9C733|LHTL1_ARATH0.00000008Lysine histidine transporter-like 1
trEMBLtr|A0A068UYS4|A0A068UYS4_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313|EMBL:CDP13571.1}
TAIR10AT4G38250.12E-146Transmembrane amino acid transporter family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2373493423736995-
GWHAAZE00000004mRNA2373493423736995-
GWHAAZE00000004exon2373493423735846-
GWHAAZE00000004exon2373657123736995-
GWHAAZE00000004CDS2373657123736995-
GWHAAZE00000004CDS2373493423735846-
Transcript Sequence

Network for GWHGAAZE015041

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01490.19Aa_trans324352.50E-69
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14209SLC36A, PAT Autophagy - yeast map04138
Protein digestion and absorptionmap04974

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf29.888
SRR3591706second leaf13.796
SRR3591707mature leaf38.963
SRR3591708Shoot apex11.204
SRR3591709Stem47.458
SRR3591710White floral bud73.895
SRR3591711White flower45.589
SRR3591712Green floral bud22.593
SRR3591713Yellow flower34.016
SRP173429 SRR8316895Juvenile bud stage 7.603
SRR8316896Juvenile bud stage 7.568
SRR8316897Juvenile bud stage 4.893
SRR8316894Third green stage 4.094
SRR8316900Third green stage 14.105
SRR8316901Third green stage 12.856
SRR8316898Complete white stage 38.916
SRR8316899Complete white stage 31.686
SRR8316903Complete white stage 50.886
SRR8316902Silver flowering stage44.692
SRR8316904Silver flowering stage68.479
SRR8316905Silver flowering stage42.103
SRR8316906Gold flowering stage 50.302
SRR8316907Gold flowering stage 71.118
SRR8316908Gold flowering stage 70.860
SRP132670SRR6706286Control18.037
SRR6706287Light intensity 50%19.691
SRR6706288Light intensity 20%19.846
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.831
CNS0095593Slightly white alabastrum(diploid) 29.582
CNS0095594Slightly white alabastrum(diploid) 310.576
CNS0095595Whole white alabastrum(diploid) 29.370
CNS0095596Whole white alabastrum(diploid) 310.436
CNS0095597Whole white alabastrum(diploid) 410.340
CNS0095598Silvery flower (diploied) 117.976
CNS0095599Silvery flower (diploied) 212.793
CNS0095600Silvery flower (diploied) 388.532
CNS0095601Golden flower (diploid) 112.195
CNS0095602Golden flower (diploid) 266.677
CNS0095603Golden flower (diploid) 362.440
CNS0095604Slightly white alabastrum(tetraploid) 16.933
CNS0095605Slightly white alabastrum(tetraploid) 26.747
CNS0095606Slightly white alabastrum(tetraploid) 312.498
CNS0095607Whole white alabastrum(tetraploid) 16.535
CNS0095608Whole white alabastrum(tetraploid) 28.008
CNS0095609Whole white alabastrum(tetraploid) 39.855
CNS0095610Silvery flower (tetraploid) 147.881
CNS0095611Silvery flower (tetraploid) 244.778
CNS0095612Silvery flower (tetraploid) 335.698
CNS0095613Golden flower (tetraploid) 122.592
CNS0095614Golden flower (tetraploid) 235.506
CNS0095615Golden flower (tetraploid) 337.411
CRA001975CRR073297Stem 110.092
CRR073298Stem 28.755
CRR073299Stem 310.333
CRR073300Leaf 17.222
CRR073301Leaf 27.262
CRR073302Leaf 39.203
CRR073303Juvenile bud 112.793
CRR073304Juvenile bud 217.946
CRR073305Juvenile bud 322.017
CRR073306Third green 198.147
CRR073307Third green 289.370
CRR073308Third green 386.403
CRR073309Second white 157.047
CRR073310Second white 229.127
CRR073311Second white 331.368
CRR073312Silver flowering 134.194
CRR073313Silver flowering 251.440
CRR073314Silver flowering 343.561
CRR073315Gold flowering 19.378
CRR073316Gold flowering 220.089
CRR073317Gold flowering 313.648
CRR073318Tawny withering 116.421
CRR073319Tawny withering 217.494
CRR073320Tawny withering 316.334