Detail information of GWHGAAZE015033


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEPS64999.17.40775E-66hypothetical protein M569_09780, partial [Genlisea aurea]
Swissprottr|P40619|HMGL_IPONI3E-53HMG1/2-like protein
trEMBLtr|S8CDG8|S8CDG8_9LAMI3E-66Uncharacterized protein {ECO:0000313|EMBL:EPS64999.1} (Fragment)
TAIR10AT1G20696.21E-28high mobility group B3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2364692423648530+
GWHAAZE00000004mRNA2364692423648530+
GWHAAZE00000004exon2364692423646970+
GWHAAZE00000004exon2364747223647594+
GWHAAZE00000004exon2364772023647777+
GWHAAZE00000004exon2364787223647916+
GWHAAZE00000004exon2364804323648123+
GWHAAZE00000004exon2364825723648349+
GWHAAZE00000004exon2364851023648530+
GWHAAZE00000004CDS2364692423646970+
GWHAAZE00000004CDS2364747223647594+
GWHAAZE00000004CDS2364772023647777+
GWHAAZE00000004CDS2364787223647916+
GWHAAZE00000004CDS2364804323648123+
GWHAAZE00000004CDS2364825723648349+
GWHAAZE00000004CDS2364851023648530+
Transcript Sequence

Network for GWHGAAZE015033

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00505.20HMG_box461151.50E-21
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHMG

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1001.451
SRR3591706second leaf1009.961
SRR3591707mature leaf1246.216
SRR3591708Shoot apex1503.566
SRR3591709Stem1215.237
SRR3591710White floral bud998.834
SRR3591711White flower1131.722
SRR3591712Green floral bud728.758
SRR3591713Yellow flower981.240
SRP173429 SRR8316895Juvenile bud stage 472.569
SRR8316896Juvenile bud stage 609.789
SRR8316897Juvenile bud stage 275.458
SRR8316894Third green stage 263.329
SRR8316900Third green stage 596.228
SRR8316901Third green stage 650.747
SRR8316898Complete white stage 329.439
SRR8316899Complete white stage 1083.389
SRR8316903Complete white stage 700.150
SRR8316902Silver flowering stage509.124
SRR8316904Silver flowering stage578.929
SRR8316905Silver flowering stage334.470
SRR8316906Gold flowering stage 921.715
SRR8316907Gold flowering stage 1142.480
SRR8316908Gold flowering stage 1186.202
SRP132670SRR6706286Control892.705
SRR6706287Light intensity 50%900.237
SRR6706288Light intensity 20%930.021
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1630.023
CNS0095593Slightly white alabastrum(diploid) 2635.593
CNS0095594Slightly white alabastrum(diploid) 3546.171
CNS0095595Whole white alabastrum(diploid) 2495.363
CNS0095596Whole white alabastrum(diploid) 3350.541
CNS0095597Whole white alabastrum(diploid) 4452.239
CNS0095598Silvery flower (diploied) 11024.195
CNS0095599Silvery flower (diploied) 2755.382
CNS0095600Silvery flower (diploied) 3623.133
CNS0095601Golden flower (diploid) 1727.799
CNS0095602Golden flower (diploid) 2580.940
CNS0095603Golden flower (diploid) 3608.837
CNS0095604Slightly white alabastrum(tetraploid) 1452.338
CNS0095605Slightly white alabastrum(tetraploid) 2421.636
CNS0095606Slightly white alabastrum(tetraploid) 3765.545
CNS0095607Whole white alabastrum(tetraploid) 1375.580
CNS0095608Whole white alabastrum(tetraploid) 2274.369
CNS0095609Whole white alabastrum(tetraploid) 3354.305
CNS0095610Silvery flower (tetraploid) 1922.714
CNS0095611Silvery flower (tetraploid) 2746.935
CNS0095612Silvery flower (tetraploid) 3864.688
CNS0095613Golden flower (tetraploid) 1991.667
CNS0095614Golden flower (tetraploid) 2882.362
CNS0095615Golden flower (tetraploid) 3489.571
CRA001975CRR073297Stem 1669.572
CRR073298Stem 2622.189
CRR073299Stem 3704.022
CRR073300Leaf 1465.487
CRR073301Leaf 2522.757
CRR073302Leaf 3443.963
CRR073303Juvenile bud 1430.546
CRR073304Juvenile bud 2301.707
CRR073305Juvenile bud 3466.542
CRR073306Third green 1145.442
CRR073307Third green 2215.052
CRR073308Third green 3217.838
CRR073309Second white 1364.962
CRR073310Second white 2369.401
CRR073311Second white 3313.719
CRR073312Silver flowering 1247.546
CRR073313Silver flowering 2202.779
CRR073314Silver flowering 3197.265
CRR073315Gold flowering 11304.394
CRR073316Gold flowering 21396.642
CRR073317Gold flowering 31041.885
CRR073318Tawny withering 11250.567
CRR073319Tawny withering 21333.451
CRR073320Tawny withering 31294.081