Gene detail

Detail information of GWHGAAZE015016

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_003635669.1	PREDICTED: phosphoserine aminotransferase 2, chloroplastic-like [Vitis vinifera]
Swissprot	tr\|Q9SHP0\|SERB2_ARATH	Phosphoserine aminotransferase 2, chloroplastic (Precursor)
trEMBL	tr\|F6H8F3\|F6H8F3_VITVI	Phosphoserine aminotransferase {ECO:0000256\|RuleBase:RU004505}
TAIR10	AT2G17630.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	23375367	23376521	+
GWHAAZE00000004	mRNA	23375367	23376521	+
GWHAAZE00000004	exon	23375367	23376521	+
GWHAAZE00000004	CDS	23375367	23376521	+

Transcript Sequence
>GWHTAAZE015030 ATGCCCATCACCTGTTCGACGAAAAACCAAGTCCAAGATCGCCCCTCCACGCCAGACCTTTCCCAAGAGCGCCTCTTTAATTTCGCTGCGGGCCCAGCCACCCTGCCGGAAAATGTCCTCAAGAAGGCCCAATCTGAGCTCTACATCTGGCGAGACGCCGGTATGAGCGTGATGGAGATGAGCCACAGGGGAAAAGATTTTCTCTCCATAATCCAAAAGGCCGAGTCAGATCTGAGAACCCTTCTGAATATACCCTCAGATTATCATGTTCTTTTCCTTCAAGGTGGTGCCACTACCCAATTCGCTGCTGTTCCTCTCAATATATGTAAACCCGAAGACCAGGTTGATTATATTGTTACCGGATCTTGGGGTGATAAGGCTTTTAAGGAAGCTACCAAGTACTGCAAGCCTAATGTGATCTGGTCCGGGAAATCTGAGAAATACACCAAGATCCCTTCTTTTGATTCATTGGAACAGAACCCGCACGCCAAGTATTTGCACATTTGTGCCAATGAAACTATTCACGGGGTGGAGTTCAAGAATTATCCGACCCCGGCTAACAAAGATGCTGTTTTGATTGCTGATATGTCTTCCAATTTCTGCTCAAAGCCTGTTGATGTGAGCAAGTTCGGGATTATCTATGCTGGTGCCCAGAAGAATGTTGGCCCATCTGGTGTTACTATAGTTATTATCAAGAAAGATTTGATTGGAAATGCTCAAGGGATTACTCCGGTGATGCTTGATTACAAGATCCATGCTGAGAATAATTCACTCTACAACACACCTCCTTGTTATGGGATTTACATGTGTGGGTTAGTGTTTGAAGATCTGTTGGCACAGGGTGGACTGGAACAAGTTGAGAAGAACAATATCAAGAAAGCCCAGATTTTGTATGATGCAATTGATGAGAGCAACGGGTTTTACAGATGCCCAGTTGAGAAATCCGTGAGGTCGTTGATGAATGTGCCGTTTACATTGGAGCAATCTGAATTGCAGTTTGAGTTTATCCAAAAGGCGGCCGCAGAGGATATGGTGCAGCTCAAAGGACACAGATCTGTGGGTGGGATGCGAGCTTCGATATACAATGCTATGCCTTTGGCTGGGGTGGAGAAATTGGTAGCTTTCATGAAGGAATTCCAGGCAAGGCATGGTTGA

Network for GWHGAAZE015016

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00266.20	Aminotran_5	26	372	8.60E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00831	serC, PSAT1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Methane metabolism	map00680
		Glycine, serine and threonine metabolism	map00260
		Cysteine and methionine metabolism	map00270
		Vitamin B6 metabolism	map00750

Gene Ontology

GO term	Ontology	Name
GO:0006564	biological_process	L-serine biosynthetic process
GO:0004648	molecular_function	O-phospho-L-serine:2-oxoglutarate aminotransferase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	111.563
	SRR3591706	second leaf	69.551
	SRR3591707	mature leaf	28.088
	SRR3591708	Shoot apex	88.974
	SRR3591709	Stem	178.937
	SRR3591710	White floral bud	59.941
	SRR3591711	White flower	63.326
	SRR3591712	Green floral bud	110.411
	SRR3591713	Yellow flower	42.910
SRP173429	SRR8316895	Juvenile bud stage	73.614
	SRR8316896	Juvenile bud stage	115.544
	SRR8316897	Juvenile bud stage	57.897
	SRR8316894	Third green stage	50.128
	SRR8316900	Third green stage	146.350
	SRR8316901	Third green stage	146.980
	SRR8316898	Complete white stage	33.434
	SRR8316899	Complete white stage	92.427
	SRR8316903	Complete white stage	66.556
	SRR8316902	Silver flowering stage	35.034
	SRR8316904	Silver flowering stage	48.546
	SRR8316905	Silver flowering stage	21.613
	SRR8316906	Gold flowering stage	68.415
	SRR8316907	Gold flowering stage	84.975
	SRR8316908	Gold flowering stage	63.733
SRP132670	SRR6706286	Control	70.346
	SRR6706287	Light intensity 50%	76.085
	SRR6706288	Light intensity 20%	81.343
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	96.017
	CNS0095593	Slightly white alabastrum(diploid) 2	100.357
	CNS0095594	Slightly white alabastrum(diploid) 3	98.638
	CNS0095595	Whole white alabastrum(diploid) 2	73.620
	CNS0095596	Whole white alabastrum(diploid) 3	89.810
	CNS0095597	Whole white alabastrum(diploid) 4	55.651
	CNS0095598	Silvery flower (diploied) 1	47.822
	CNS0095599	Silvery flower (diploied) 2	54.721
	CNS0095600	Silvery flower (diploied) 3	93.236
	CNS0095601	Golden flower (diploid) 1	36.105
	CNS0095602	Golden flower (diploid) 2	81.169
	CNS0095603	Golden flower (diploid) 3	72.165
	CNS0095604	Slightly white alabastrum(tetraploid) 1	110.283
	CNS0095605	Slightly white alabastrum(tetraploid) 2	91.977
	CNS0095606	Slightly white alabastrum(tetraploid) 3	162.196
	CNS0095607	Whole white alabastrum(tetraploid) 1	55.936
	CNS0095608	Whole white alabastrum(tetraploid) 2	47.445
	CNS0095609	Whole white alabastrum(tetraploid) 3	105.677
	CNS0095610	Silvery flower (tetraploid) 1	58.910
	CNS0095611	Silvery flower (tetraploid) 2	40.701
	CNS0095612	Silvery flower (tetraploid) 3	47.667
	CNS0095613	Golden flower (tetraploid) 1	39.204
	CNS0095614	Golden flower (tetraploid) 2	80.386
	CNS0095615	Golden flower (tetraploid) 3	31.050
CRA001975	CRR073297	Stem 1	92.726
	CRR073298	Stem 2	95.283
	CRR073299	Stem 3	100.379
	CRR073300	Leaf 1	98.306
	CRR073301	Leaf 2	102.499
	CRR073302	Leaf 3	96.502
	CRR073303	Juvenile bud 1	123.135
	CRR073304	Juvenile bud 2	122.355
	CRR073305	Juvenile bud 3	134.635
	CRR073306	Third green 1	65.520
	CRR073307	Third green 2	58.219
	CRR073308	Third green 3	58.911
	CRR073309	Second white 1	81.375
	CRR073310	Second white 2	60.800
	CRR073311	Second white 3	61.698
	CRR073312	Silver flowering 1	104.592
	CRR073313	Silver flowering 2	119.794
	CRR073314	Silver flowering 3	121.388
	CRR073315	Gold flowering 1	26.900
	CRR073316	Gold flowering 2	35.506
	CRR073317	Gold flowering 3	29.679
	CRR073318	Tawny withering 1	131.283
	CRR073319	Tawny withering 2	96.250
	CRR073320	Tawny withering 3	164.126