Detail information of GWHGAAZE014958


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO71291.10hypothetical protein CISIN_1g003856mg [Citrus sinensis]
Swissprottr|F4I0P8|VP35B_ARATH0Vacuolar protein sorting-associated protein 35B
trEMBLtr|A0A067G7C4|A0A067G7C4_CITSI0Vacuolar protein sorting-associated protein 35 {ECO:0000256|PIRNR:PIRNR009375}
TAIR10AT1G75850.10VPS35 homolog B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2226229222277208-
GWHAAZE00000004mRNA2226229222277208-
GWHAAZE00000004exon2226229222262502-
GWHAAZE00000004exon2226288322262996-
GWHAAZE00000004exon2226359322263696-
GWHAAZE00000004exon2226378822263895-
GWHAAZE00000004exon2226400922264089-
GWHAAZE00000004exon2226418922264257-
GWHAAZE00000004exon2226438322264472-
GWHAAZE00000004exon2226528322265372-
GWHAAZE00000004exon2226887922268968-
GWHAAZE00000004exon2226914322269208-
GWHAAZE00000004exon2226929322269532-
GWHAAZE00000004exon2227191622272032-
GWHAAZE00000004exon2227216422272223-
GWHAAZE00000004exon2227228622272360-
GWHAAZE00000004exon2227340322273525-
GWHAAZE00000004exon2227363522273724-
GWHAAZE00000004exon2227382922273885-
GWHAAZE00000004exon2227448422274571-
GWHAAZE00000004exon2227483922275024-
GWHAAZE00000004exon2227623722276360-
GWHAAZE00000004exon2227691222277008-
GWHAAZE00000004exon2227711622277208-
GWHAAZE00000004CDS2227711622277208-
GWHAAZE00000004CDS2227691222277008-
GWHAAZE00000004CDS2227623722276360-
GWHAAZE00000004CDS2227483922275024-
GWHAAZE00000004CDS2227448422274571-
GWHAAZE00000004CDS2227382922273885-
GWHAAZE00000004CDS2227363522273724-
GWHAAZE00000004CDS2227340322273525-
GWHAAZE00000004CDS2227228622272360-
GWHAAZE00000004CDS2227216422272223-
GWHAAZE00000004CDS2227191622272032-
GWHAAZE00000004CDS2226929322269532-
GWHAAZE00000004CDS2226914322269208-
GWHAAZE00000004CDS2226887922268968-
GWHAAZE00000004CDS2226528322265372-
GWHAAZE00000004CDS2226438322264472-
GWHAAZE00000004CDS2226418922264257-
GWHAAZE00000004CDS2226400922264089-
GWHAAZE00000004CDS2226378822263895-
GWHAAZE00000004CDS2226359322263696-
GWHAAZE00000004CDS2226288322262996-
GWHAAZE00000004CDS2226229222262502-
Transcript Sequence

Network for GWHGAAZE014958

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03635.18Vps35127471.50E-279
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18468VPS35 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0015031biological_processprotein transport
GO:0042147biological_processretrograde transport, endosome to Golgi
GO:0030906cellular_componentretromer, cargo-selective complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.539
SRR3591706second leaf23.364
SRR3591707mature leaf22.842
SRR3591708Shoot apex35.956
SRR3591709Stem37.130
SRR3591710White floral bud36.032
SRR3591711White flower38.412
SRR3591712Green floral bud30.935
SRR3591713Yellow flower33.833
SRP173429 SRR8316895Juvenile bud stage 29.046
SRR8316896Juvenile bud stage 38.093
SRR8316897Juvenile bud stage 19.699
SRR8316894Third green stage 16.600
SRR8316900Third green stage 33.713
SRR8316901Third green stage 36.997
SRR8316898Complete white stage 16.123
SRR8316899Complete white stage 45.584
SRR8316903Complete white stage 27.049
SRR8316902Silver flowering stage15.806
SRR8316904Silver flowering stage23.425
SRR8316905Silver flowering stage10.655
SRR8316906Gold flowering stage 34.792
SRR8316907Gold flowering stage 30.532
SRR8316908Gold flowering stage 35.407
SRP132670SRR6706286Control29.806
SRR6706287Light intensity 50%32.484
SRR6706288Light intensity 20%35.013
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.202
CNS0095593Slightly white alabastrum(diploid) 220.474
CNS0095594Slightly white alabastrum(diploid) 321.747
CNS0095595Whole white alabastrum(diploid) 216.679
CNS0095596Whole white alabastrum(diploid) 315.877
CNS0095597Whole white alabastrum(diploid) 416.188
CNS0095598Silvery flower (diploied) 124.167
CNS0095599Silvery flower (diploied) 218.907
CNS0095600Silvery flower (diploied) 330.690
CNS0095601Golden flower (diploid) 120.502
CNS0095602Golden flower (diploid) 233.445
CNS0095603Golden flower (diploid) 331.497
CNS0095604Slightly white alabastrum(tetraploid) 126.023
CNS0095605Slightly white alabastrum(tetraploid) 221.530
CNS0095606Slightly white alabastrum(tetraploid) 344.365
CNS0095607Whole white alabastrum(tetraploid) 118.604
CNS0095608Whole white alabastrum(tetraploid) 214.109
CNS0095609Whole white alabastrum(tetraploid) 331.381
CNS0095610Silvery flower (tetraploid) 134.944
CNS0095611Silvery flower (tetraploid) 235.733
CNS0095612Silvery flower (tetraploid) 336.345
CNS0095613Golden flower (tetraploid) 121.071
CNS0095614Golden flower (tetraploid) 234.488
CNS0095615Golden flower (tetraploid) 330.796
CRA001975CRR073297Stem 134.615
CRR073298Stem 232.399
CRR073299Stem 329.077
CRR073300Leaf 136.096
CRR073301Leaf 230.583
CRR073302Leaf 325.855
CRR073303Juvenile bud 126.693
CRR073304Juvenile bud 222.164
CRR073305Juvenile bud 334.273
CRR073306Third green 116.817
CRR073307Third green 213.350
CRR073308Third green 316.708
CRR073309Second white 111.623
CRR073310Second white 211.723
CRR073311Second white 316.702
CRR073312Silver flowering 113.372
CRR073313Silver flowering 211.312
CRR073314Silver flowering 310.068
CRR073315Gold flowering 19.608
CRR073316Gold flowering 217.645
CRR073317Gold flowering 39.628
CRR073318Tawny withering 127.358
CRR073319Tawny withering 223.013
CRR073320Tawny withering 326.400