Gene detail

Detail information of GWHGAAZE014885

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010252386.1	0	PREDICTED: peroxidase 72-like [Nelumbo nucifera]
Swissprot	tr\|Q9FJZ9\|PER72_ARATH	9E-176	Peroxidase 72 (Precursor)
trEMBL	tr\|K4B6D9\|K4B6D9_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g062510.2.1}
TAIR10	AT5G66390.1	9E-130	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	20919331	20921170	+
GWHAAZE00000004	mRNA	20919331	20921170	+
GWHAAZE00000004	exon	20919331	20919555	+
GWHAAZE00000004	exon	20920048	20920239	+
GWHAAZE00000004	exon	20920382	20920547	+
GWHAAZE00000004	exon	20920761	20921170	+
GWHAAZE00000004	CDS	20919331	20919555	+
GWHAAZE00000004	CDS	20920048	20920239	+
GWHAAZE00000004	CDS	20920382	20920547	+
GWHAAZE00000004	CDS	20920761	20921170	+

Transcript Sequence
>GWHTAAZE014899 ATGGTTAAGTACACGAGCTTTTTCACGTTTATAGCTCTTCTATATTTTTCTCCTCTCAGCTTCTCTCACAAGACCAATGGTGGCTACCTCTACCCGCAGTTCTATGACCGGTCGTGCCCAAAAGCCAAAGAAATAGTTAAGTCAGTCGTTGCGAAGGCTGTTGCTAAAGAAGCCCGCATGGCTGCTTCGTTGGTCAGGCTCCATTTCCATGATTGCTTTGTCAAGGGGTGCGATGCATCAGTACTTCTAGACAGTAGTGGGAGCATAATCAGTGAGAAGGGGTCAAACCCTAACCGGAACTCGATTCGTGGGTTCGATGTTATTGACGAGATCAAGTATGAACTGGAGAAGGCTTGTCCTCAAACTGTTTCTTGTGCTGATATCTTGGCTATCGCTGCTAGGGACTCTACTGTTTTGAGAGGTGGGCCTAGCTGGGAGGTTCCTCTAGGAAGAAAGGATTCCAAAGGTGCAAGCTTGAGTGGCTCTAACAACAACATTCCTGCTCCAAACAACACTTTCCTAACTATCCTCACCAAATTTAAGCTTCAAGGACTGGATATTGTTGATCTTGTGGCACTCTCCGGAAGTCACACAATTGGAAATGCTCGATGCACCAGCTTCAGGCAAAGGCTTTACAACCAATCGGGCAATGGGCTAGCCGACTTCTCGCTGCAAGGATCGTACGCTGCCCAATTGCGCACACAGTGCCCAAGATCGGGGGGTGACCAAAACCTCTTCTTGGATTTTGTCTCCCCAACTAAGTTTGATAATAGCTACTTCAAGAACTTGTTAGCTTCAAAGGGCTTGTTAAATTCTGACCAAGTTCTAGTGACCAAGAGTGCAGCGTCATTGGAGTTAGTGAAGAAATACGCGCAGAATAATGAACTTTTCTTCGAGCAGTTCGCCAAGTCTATGGTCAAGATGGGAAATATTTCTCCATTAACCGGTTTGAGGGGGGAGATTAGGAAGAGTTGCAGGAAGATCAACAGTTAG

Network for GWHGAAZE014885

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	46	293	2.40E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006979	biological_process	response to oxidative stress
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.380
	SRR3591706	second leaf	0.639
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	1.784
	SRR3591709	Stem	13.082
	SRR3591710	White floral bud	0.507
	SRR3591711	White flower	0.282
	SRR3591712	Green floral bud	0.390
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.437
	SRR8316896	Juvenile bud stage	0.188
	SRR8316897	Juvenile bud stage	0.323
	SRR8316894	Third green stage	0.279
	SRR8316900	Third green stage	0.044
	SRR8316901	Third green stage	0.110
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.531
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.148
	SRR8316904	Silver flowering stage	0.069
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.139
SRP132670	SRR6706286	Control	0.545
	SRR6706287	Light intensity 50%	0.243
	SRR6706288	Light intensity 20%	0.529
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.136
	CNS0095593	Slightly white alabastrum(diploid) 2	0.508
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.058
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.066
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.071
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.192
	CNS0095603	Golden flower (diploid) 3	0.187
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.149
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.085
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.422
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.052
	CNS0095611	Silvery flower (tetraploid) 2	0.140
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.002
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.409
	CRR073298	Stem 2	0.260
	CRR073299	Stem 3	0.066
	CRR073300	Leaf 1	0.101
	CRR073301	Leaf 2	0.748
	CRR073302	Leaf 3	0.252
	CRR073303	Juvenile bud 1	0.056
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.122
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.333
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	63.702
	CRR073319	Tawny withering 2	49.493
	CRR073320	Tawny withering 3	78.113