Gene detail

Detail information of GWHGAAZE014855

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099635.1	2.8197E-160	PREDICTED: putative glucose-6-phosphate 1-epimerase [Sesamum indicum]
Swissprot	tr\|Q40784\|AAPC_CENCI	2E-36	Putative glucose-6-phosphate 1-epimerase
trEMBL	tr\|A0A068U1F3\|A0A068U1F3_COFCA	1E-160	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP02004.1}
TAIR10	AT5G66530.2	1E-116	Galactose mutarotase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	20348178	20352435	+
GWHAAZE00000004	mRNA	20348178	20352435	+
GWHAAZE00000004	exon	20348178	20348294	+
GWHAAZE00000004	exon	20349476	20349603	+
GWHAAZE00000004	exon	20349954	20350005	+
GWHAAZE00000004	exon	20350362	20350499	+
GWHAAZE00000004	exon	20350676	20350774	+
GWHAAZE00000004	exon	20351074	20351171	+
GWHAAZE00000004	exon	20351809	20351916	+
GWHAAZE00000004	exon	20352013	20352094	+
GWHAAZE00000004	exon	20352370	20352435	+
GWHAAZE00000004	CDS	20348178	20348294	+
GWHAAZE00000004	CDS	20349476	20349603	+
GWHAAZE00000004	CDS	20349954	20350005	+
GWHAAZE00000004	CDS	20350362	20350499	+
GWHAAZE00000004	CDS	20350676	20350774	+
GWHAAZE00000004	CDS	20351074	20351171	+
GWHAAZE00000004	CDS	20351809	20351916	+
GWHAAZE00000004	CDS	20352013	20352094	+
GWHAAZE00000004	CDS	20352370	20352435	+

Transcript Sequence
>GWHTAAZE014869 ACATCAGGTTATGGCTTCTGCAAGTGTGAACAAAGAGGCGGCTACATGTTTGGGAGTAAAGGTTACCGAAGGATTAGGGAATTTGCCCAAGGTCATTTTGACTTCTACTCACGGAAGAGTATCTTCTTTTGCAGTGAGGCCGAGCTATACTTATTCGGAGGATGCGTCACATCTTGGAAAGTTTCCAGCAAGGATCTCCTTTTTGTCAGGCCAGATGCTGTTTTCAATGGGCAGAAACCTATCAGTGGAGGTATACCACATTGTTTTCCACAGTTTGGTCCTGGCCCAATGCAACAGCATGGATTCGCAAGAAACTCGAACTGGTCCATTCTTAATTCTGAAAATGCGGATGGAAATCCTGTAATCACTTTAGAGCTCAAAGATAGTCTGTATAGTCGTGCTATGTGGGATTTCAGTTTCCAAGCACTATACAAGATCTCTCTAGATAAAAAGAGCCTTTCAACAGAACTAACTATTACAAATACGGACAAGAAATCATTTTCATTCACCACTGCCCTGCATACGTACTTCAGCGCTTCTGTAACAGGGGCATCTGTGAGGGGTTTAAAAGGTTGCAAAACCTGGAACAAAGATCCAGATCCAAAAAATCCACTGGAGGGCACGGAGGAAAGGGATGTTGTCACCTTCCCTGGATTCGTGGATTGTGTTTATCTTGAAGCCCCTAATGAGTTAAACCTCGATAATGGTCTGGGCGATGTAATATCCATCCAAAATACAAATTGGTCTGATGCTGTTCTCTGGAACCCCCATTTGACAATGGAAGCTTGCTACAAAGATTTTGTTTGTGTTGAAAATGCCAAGATTGGTGAAGTTAAGCTAGAACCTGAGAAATCTTGGACAGCTATTCAACAACTAAGCATCAAGTGA

Network for GWHGAAZE014855

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01263.21	Aldose_epim	46	292	1.80E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01792	E5.1.3.15	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0016853	molecular_function	isomerase activity
GO:0003824	molecular_function	catalytic activity
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	72.962
	SRR3591706	second leaf	107.661
	SRR3591707	mature leaf	75.588
	SRR3591708	Shoot apex	62.477
	SRR3591709	Stem	42.558
	SRR3591710	White floral bud	66.156
	SRR3591711	White flower	66.763
	SRR3591712	Green floral bud	111.900
	SRR3591713	Yellow flower	89.266
SRP173429	SRR8316895	Juvenile bud stage	40.701
	SRR8316896	Juvenile bud stage	52.271
	SRR8316897	Juvenile bud stage	46.619
	SRR8316894	Third green stage	40.042
	SRR8316900	Third green stage	145.920
	SRR8316901	Third green stage	125.881
	SRR8316898	Complete white stage	45.347
	SRR8316899	Complete white stage	110.928
	SRR8316903	Complete white stage	46.121
	SRR8316902	Silver flowering stage	76.245
	SRR8316904	Silver flowering stage	69.555
	SRR8316905	Silver flowering stage	45.582
	SRR8316906	Gold flowering stage	132.842
	SRR8316907	Gold flowering stage	160.332
	SRR8316908	Gold flowering stage	164.751
SRP132670	SRR6706286	Control	114.964
	SRR6706287	Light intensity 50%	121.016
	SRR6706288	Light intensity 20%	129.197
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	41.080
	CNS0095593	Slightly white alabastrum(diploid) 2	36.317
	CNS0095594	Slightly white alabastrum(diploid) 3	30.538
	CNS0095595	Whole white alabastrum(diploid) 2	50.763
	CNS0095596	Whole white alabastrum(diploid) 3	56.177
	CNS0095597	Whole white alabastrum(diploid) 4	42.752
	CNS0095598	Silvery flower (diploied) 1	37.273
	CNS0095599	Silvery flower (diploied) 2	28.414
	CNS0095600	Silvery flower (diploied) 3	56.812
	CNS0095601	Golden flower (diploid) 1	36.315
	CNS0095602	Golden flower (diploid) 2	48.185
	CNS0095603	Golden flower (diploid) 3	49.342
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.127
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.359
	CNS0095606	Slightly white alabastrum(tetraploid) 3	60.656
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.347
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.453
	CNS0095609	Whole white alabastrum(tetraploid) 3	79.475
	CNS0095610	Silvery flower (tetraploid) 1	92.842
	CNS0095611	Silvery flower (tetraploid) 2	117.202
	CNS0095612	Silvery flower (tetraploid) 3	97.241
	CNS0095613	Golden flower (tetraploid) 1	49.013
	CNS0095614	Golden flower (tetraploid) 2	74.240
	CNS0095615	Golden flower (tetraploid) 3	95.194
CRA001975	CRR073297	Stem 1	42.751
	CRR073298	Stem 2	41.160
	CRR073299	Stem 3	40.824
	CRR073300	Leaf 1	53.614
	CRR073301	Leaf 2	53.837
	CRR073302	Leaf 3	65.045
	CRR073303	Juvenile bud 1	65.238
	CRR073304	Juvenile bud 2	71.327
	CRR073305	Juvenile bud 3	43.389
	CRR073306	Third green 1	48.884
	CRR073307	Third green 2	21.579
	CRR073308	Third green 3	32.711
	CRR073309	Second white 1	71.246
	CRR073310	Second white 2	48.700
	CRR073311	Second white 3	45.861
	CRR073312	Silver flowering 1	38.798
	CRR073313	Silver flowering 2	36.776
	CRR073314	Silver flowering 3	34.934
	CRR073315	Gold flowering 1	71.472
	CRR073316	Gold flowering 2	86.917
	CRR073317	Gold flowering 3	45.013
	CRR073318	Tawny withering 1	18.374
	CRR073319	Tawny withering 2	17.588
	CRR073320	Tawny withering 3	25.469