Gene detail

Detail information of GWHGAAZE014833

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AEI98626.1	0	hypothetical protein 111O18.13 [Coffea canephora]
Swissprot	tr\|Q8W0W3\|TF2B_ORYSJ	1E-15	Transcription initiation factor IIB
trEMBL	tr\|I6M4G2\|I6M4G2_COFCA	0	Uncharacterized protein {ECO:0000313\|EMBL:AEI98626.1}
TAIR10	AT4G36650.1	5E-160	plant-specific TFIIB-related protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	19928488	19933428	+
GWHAAZE00000004	mRNA	19928488	19933428	+
GWHAAZE00000004	exon	19928488	19929063	+
GWHAAZE00000004	exon	19931101	19931244	+
GWHAAZE00000004	exon	19931741	19931899	+
GWHAAZE00000004	exon	19932661	19933428	+
GWHAAZE00000004	CDS	19928488	19929063	+
GWHAAZE00000004	CDS	19931101	19931244	+
GWHAAZE00000004	CDS	19931741	19931899	+
GWHAAZE00000004	CDS	19932661	19933428	+

Transcript Sequence
>GWHTAAZE014847 ATGAGGTGCCCCTACTGTTCATCGCCACAAGGCCGGTGCGCCACCTCCCCCGCCGGCCGGCACATAACCGAGTGCACTTCATGCGGCCGAGTAGTAGAAGAACGGCAAACCCAACCCCACCACCTCTTCCACCTCCGGGCCCACGACTCCCCACTCTGCCTCGTAACCTCCGACCTCCCCACCCTCCCCACATCCCCTTCCGAAGAAGACCCCTTCGAACCCACAGGCTTCATCACCGCCTTCTCAGCCTGGTCCCTCGAACCCTACCCTATCTTCACCAACTCCTCCATCTCATTTGCAGGTCACCTCGCCGAGCTCGAACGAGCCCTCGAAACTACTTCCAGCTCTTCGTCTTCGAGTGGTCCCTCGGTTGTTGTTGATAACCTTAGGGCGTATTTGCAGATTATTGATGTGGCGTCTATACTGAGACTGGACTGTGACATATCGGACCATGCTTTTCAGTTGTTTAGGGATTGTTCTTCGGCCACTTGTTTGAGGAACCGGAGTGTGGAGGCGCTTGCGACTGCTGCTCTTGTTCAGGCCATACGGGAGGCACAAGAACCTAGGACTCTCCAGCTTTGCCAAGTGAGCTTCAAATGCACCTTCTTAGCTCAACAACCACCGGGTCTGAACAGTCCAAAGAAACATGTGTCTGCTTACAGTAACCACTCCCACCCAATTGCCCAGACTGTGTTGGGTTCAGCCTGTAGGGTTTCACAAGAAATATCAATTGCGGCCAATTTACCTCAGAAGGAGATTGGCAAGTACATCAAGATACTTGGAGAAGCTTTACAATTAAGCCAACCAATCAACAGCAATTCCATTTCTGTCCATATGCCAAGGTTTTGTACACTTCTCCAGCTAAACAAATCTGCTCAGGAGCTAGCAACACACATTGGTGAAGTTGTGATCAACAAATGCTTCTGTACTAGGAGGAATCCCATCAGCATCTCCGCAGCCGCCATATACCTGGCCTGCCAGCTTGAGGACAAACGCAAGACCCAAGCCGAAATCTGTAAGGTAACAGGTCTCACTGAGGTCACCCTCCGTAAAGTCTACAAGGAGCTTCTCGAGAACTGGGACGATCTTCTTCCCTCTAACTATACTCCGGCTGTCCCACCGGAAAAGGCATTTCCGACTGCCACAATTGCCTCGGGCCGTTCTTCAACCCCTAGAATCGACCTCGTTGAAGCGACTTCTTTAGACAGAATCAAGGAATCCGAAACTAAGCCTACTAAAACTAACGATATCGTGGGCAAAGAGGAAGGCGAATGGAAAGAGAGTTTTCGCGGGACCCATGCCCCTGCGGTGCATCAGGGATCGGGACCCGGTTTCTGGAAATCTCAGGCTCAATCTGGGCCATCCGTTAAGATGGTAGAGAAGAGCTTGAATGTGATTCAAGAGATGGATGTAGATTCGAAGTTTAATTGCAATGACTTGGAGAAGAAAGCAGATAAGGATGTAATGGGTTCTAATTCTCTGAGGCCAAGCCAGTTTGCAGCCCCACCGCCAGCCTCGATTGCTACTTCCAGAACCTGGCCTTTTCGGCCCCCGGTTTCGTTGGGGCCAGCTTCATCTACTAGATTTGTGCATCAGCCAAATTTGGGTTCAAGTGTGGTGGATCAAAATGAAAGTAAAAAGGGTTAG

Network for GWHGAAZE014833

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00382.20	TFIIB	279	349	4.30E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03124	TFIIB, GTF2B, SUA7, tfb	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0070897	biological_process	transcription preinitiation complex assembly
GO:0017025	molecular_function	TBP-class protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.216
	SRR3591706	second leaf	4.957
	SRR3591707	mature leaf	6.987
	SRR3591708	Shoot apex	11.590
	SRR3591709	Stem	7.095
	SRR3591710	White floral bud	8.022
	SRR3591711	White flower	12.042
	SRR3591712	Green floral bud	7.559
	SRR3591713	Yellow flower	10.980
SRP173429	SRR8316895	Juvenile bud stage	4.016
	SRR8316896	Juvenile bud stage	5.713
	SRR8316897	Juvenile bud stage	2.002
	SRR8316894	Third green stage	1.582
	SRR8316900	Third green stage	3.878
	SRR8316901	Third green stage	4.365
	SRR8316898	Complete white stage	1.342
	SRR8316899	Complete white stage	6.706
	SRR8316903	Complete white stage	3.494
	SRR8316902	Silver flowering stage	3.344
	SRR8316904	Silver flowering stage	4.659
	SRR8316905	Silver flowering stage	2.179
	SRR8316906	Gold flowering stage	10.384
	SRR8316907	Gold flowering stage	9.868
	SRR8316908	Gold flowering stage	11.420
SRP132670	SRR6706286	Control	5.526
	SRR6706287	Light intensity 50%	5.343
	SRR6706288	Light intensity 20%	5.669
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.453
	CNS0095593	Slightly white alabastrum(diploid) 2	4.024
	CNS0095594	Slightly white alabastrum(diploid) 3	2.812
	CNS0095595	Whole white alabastrum(diploid) 2	3.524
	CNS0095596	Whole white alabastrum(diploid) 3	2.510
	CNS0095597	Whole white alabastrum(diploid) 4	2.575
	CNS0095598	Silvery flower (diploied) 1	8.444
	CNS0095599	Silvery flower (diploied) 2	4.916
	CNS0095600	Silvery flower (diploied) 3	8.757
	CNS0095601	Golden flower (diploid) 1	10.666
	CNS0095602	Golden flower (diploid) 2	11.154
	CNS0095603	Golden flower (diploid) 3	9.999
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.875
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.391
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.467
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.867
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.058
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.265
	CNS0095610	Silvery flower (tetraploid) 1	9.285
	CNS0095611	Silvery flower (tetraploid) 2	13.346
	CNS0095612	Silvery flower (tetraploid) 3	6.830
	CNS0095613	Golden flower (tetraploid) 1	5.760
	CNS0095614	Golden flower (tetraploid) 2	8.818
	CNS0095615	Golden flower (tetraploid) 3	9.451
CRA001975	CRR073297	Stem 1	10.323
	CRR073298	Stem 2	9.557
	CRR073299	Stem 3	11.585
	CRR073300	Leaf 1	8.948
	CRR073301	Leaf 2	7.370
	CRR073302	Leaf 3	6.683
	CRR073303	Juvenile bud 1	6.640
	CRR073304	Juvenile bud 2	3.703
	CRR073305	Juvenile bud 3	10.339
	CRR073306	Third green 1	1.566
	CRR073307	Third green 2	2.045
	CRR073308	Third green 3	1.631
	CRR073309	Second white 1	6.585
	CRR073310	Second white 2	4.751
	CRR073311	Second white 3	3.782
	CRR073312	Silver flowering 1	5.767
	CRR073313	Silver flowering 2	3.494
	CRR073314	Silver flowering 3	4.687
	CRR073315	Gold flowering 1	12.121
	CRR073316	Gold flowering 2	15.597
	CRR073317	Gold flowering 3	15.545
	CRR073318	Tawny withering 1	11.154
	CRR073319	Tawny withering 2	6.595
	CRR073320	Tawny withering 3	7.586