Gene detail

Detail information of GWHGAAZE014708

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006357742.1	PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2-like [Solanum tuberosum]
Swissprot	tr\|C0LGX3\|HSL2_ARATH	LRR receptor-like serine/threonine-protein kinase HSL2 (Precursor)
trEMBL	tr\|M1D0L1\|M1D0L1_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400078707}
TAIR10	AT5G65710.1	HAESA-like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	17018708	17021323	-
GWHAAZE00000004	mRNA	17018708	17021323	-
GWHAAZE00000004	exon	17018708	17021323	-
GWHAAZE00000004	CDS	17018708	17021323	-

Transcript Sequence
>GWHTAAZE014722 ATGGCTATTTTGTTCATCGATTTCATCTTCTCGGCAACTTCTTTGAGCAGAGACGCGGCTCTTCTGCTTCGAATCAAGAACAATCAGCTCAACGACGTCAATGGTCGACTCAGTGATTGGACCGAGTCGACACAGAATGCTCCTTGCAATTGGACCGCCATTCAGTGTGATCCTCGGAGTATCGCTGTTGTTTCCGTTGACTTCACCAGTTTTGGAGTTTCCGGCAGTTTTCCGGCTGATTTTTGCCGGATTCAAACTCTCCAAATCCTCAATCTGTTCGACAATAGTTTCGAGGGAAGTATATCTTCTAACTCCGTTTCTCTCTGTTCTCATATTCATTTCTTAAATCTCTCTAGCAACTATTTTCGAGGCAAATTGCCCGAGTTTGGCATAAATTTCCTAAACTTGACCGTGCTTGACCTCTCCATTAATGAATTTTCCGGCGACTTTACGTCCAATCTTGGTTTTTTTCCGGCGCTTCAGGTGCTTAACCTAGCTGGAAACTTGCTCAATGGCACCATACCTGAGTTTATTACCAATCTAACCGAGTTGACTCGGCTCGAACTCGGTTCTAATCCCTTCTTTCCAGGTCCTTTGCCTTCCAACCTTGGACGCCTCACTAAGCTTCAATATCTATGGATTGCAAACTCCAATCTAATCGGAAGCATTCCATATTCTATTGGAAATCTCGTGCAATTGAAGAATCTGGACCTTTCGAACAACTCTCTCACCGGTGCCATCCCTCGTACTATTGGCGGATTGAAAAATGCCCAACAGATTGAGCTTTACGAGAACCATCTATCAGGCGAATTGCCTAATTCATTTGCGAATTTAACTTCCTTGCTTCGGTTCGACTCCTCTGAAAACAATCTCACCGGAAAATTACCGGAGAGTCTCGTTAACTTGCGTCTCGAGTCATTCAACGTCAATGACAACAAACTGGAAGGGGAAATTCCGGAAATTCTCTCTTCAAATCCTATTCTCAGAGAGTTGAAGCTCTTCAATAACAAATTTTCCGGTATTTTGCCGGAAAATTTAGGTAGGAATTCAGATTTGGAAGAGTTTGATGTCTCTGGCAATCAATTCGAAGGTCCATTACCTCCGAATCTCTGTTACAGAAAGAAGCTTCAACGTTTACTCGTTTTCAATAACAAATTCTCCGGTACTATACCAGATTTGTACGGTGACTGTGATTCTCTTACTTATATACGCATCTTCAACAATGAATTATCTGGACAAGTCCCGGTTGGTCTTTGGAGTTTTTCTGGACTTCAATTGCTTCAACTCCAAAACAATCTATTTGAAGGCCCGATTTCTCCGTCAATTTCCGGTGCTAAAGGCCTAACGCAGTTACTGTTATCGGGCAACAAATTCTCCGGCAAATTTCCATCTGAGATATGCGGGTTGACGGAGCTTGTAGTGCTGGATATAAGCACAAACCAATTCTCAGGCGAATTACCTTCTTGTATAACCAAGTTGAAGAAACTACAGAAGCTTGACCTTCAAAGCAACATGTTCACGGGCGAAATTCCAAACACATTGAGTTCATGGACTGAGCTTGCGGAGCTGAATTTATCAAACAACAAACTCACAGGCGAAATTCCTAGTGGACTCGGCGATTTACCGGTGCTAACGTATTTAGACCTAGGCCGGAATTTACTTTCCGGCAGGATTCCAGCGGAGTTGACGAAGTTAAAACTCAATAAGTTCAACATCTCTAATAATCAACTCCAAGGCAGAGTTCCTCTTAGTTTCAGTAACGAGTTTTACGTTCCAAGCCTGTTGGGTAACCCGAATCTCTGTAGTCCGGATCTTAAACCAATCCATGCTTGCTCTAGACCCAGACCCATTAGCTTCTACCTAGTGGGTATTCTCTCAGCGTTTGCTTTAATTCTCATATGTTCCCTCCTCTGGCTCTTCATCAAGACGAATAAACTACAAGCTTTTGGCAGTAGAAACTCCCGTTCATGGAAAATCACTTCATTCCAACGGGTTGGGTTTAATGAAGAGGACATGCTGGCCTCTTTAACAGAGGGCAACCTCATTGGATCCGGCGGGTCGGGCCGGGTGTACCGTGTCAAGCTCAAGACGGGTCAAACTGTGGCAGTTAAAAAGCTTCTGGGGGTCAACCGGCAGCCTGAAATGGAGGGGGTTTTCCGGTCGGAGGTGGAGACATTGGGAAGAATCCGGCATGGCAATATTGTAAAATTGCTGTGTAGTTGCATTGGCGAGGATTTCAGGGTTTTGGTTTATGAGTACATGGAGAACGGGAGTTTGGGTGATGTGTTGCATGGAGAGAAGGGTGGGGTGGTTTTGGATTGGGCCAAGAGGTATGAGATTGCTGTTGGGGCTGCCCATGGCCTGGCCTATTTGCACCACGATTGTGTTCCTTCTATCGTGCACCGGGATGTGAAGTGTAATAATATACTGTTGGATGAGGAGTTTAGGCCACGTGTGGCTGATTTTGGGCTGGCTAAAGAGTTGCAGCTAGAGGTGAAGGAGAGTGATAATCTGCTAATGTCTCGTGTGGCTGGTTCCTATGGCTACATTGCTCCAGGTGAGTTTTGCCCCTTGTCTTGCTTATTCCTTCTTTCGTTTGTTCAATTCAAAGATTGA

Network for GWHGAAZE014708

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	17	57	9.70E-07
PF00560.34	LRR_1	232	254	0.22
PF00560.34	LRR_1	495	516	1.9
PF00069.26	Pkinase	678	852	4.10E-34

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.100
	SRR3591706	second leaf	12.390
	SRR3591707	mature leaf	12.873
	SRR3591708	Shoot apex	9.887
	SRR3591709	Stem	13.828
	SRR3591710	White floral bud	6.807
	SRR3591711	White flower	13.196
	SRR3591712	Green floral bud	9.470
	SRR3591713	Yellow flower	2.348
SRP173429	SRR8316895	Juvenile bud stage	10.466
	SRR8316896	Juvenile bud stage	16.350
	SRR8316897	Juvenile bud stage	7.746
	SRR8316894	Third green stage	5.269
	SRR8316900	Third green stage	11.101
	SRR8316901	Third green stage	12.095
	SRR8316898	Complete white stage	1.298
	SRR8316899	Complete white stage	13.864
	SRR8316903	Complete white stage	3.610
	SRR8316902	Silver flowering stage	2.019
	SRR8316904	Silver flowering stage	3.420
	SRR8316905	Silver flowering stage	1.173
	SRR8316906	Gold flowering stage	3.946
	SRR8316907	Gold flowering stage	3.160
	SRR8316908	Gold flowering stage	2.466
SRP132670	SRR6706286	Control	12.290
	SRR6706287	Light intensity 50%	12.372
	SRR6706288	Light intensity 20%	12.802
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.311
	CNS0095593	Slightly white alabastrum(diploid) 2	8.978
	CNS0095594	Slightly white alabastrum(diploid) 3	5.434
	CNS0095595	Whole white alabastrum(diploid) 2	6.785
	CNS0095596	Whole white alabastrum(diploid) 3	4.361
	CNS0095597	Whole white alabastrum(diploid) 4	6.268
	CNS0095598	Silvery flower (diploied) 1	11.935
	CNS0095599	Silvery flower (diploied) 2	15.459
	CNS0095600	Silvery flower (diploied) 3	9.362
	CNS0095601	Golden flower (diploid) 1	17.977
	CNS0095602	Golden flower (diploid) 2	11.559
	CNS0095603	Golden flower (diploid) 3	12.030
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.877
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.608
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.732
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.828
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.702
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.679
	CNS0095610	Silvery flower (tetraploid) 1	7.540
	CNS0095611	Silvery flower (tetraploid) 2	6.654
	CNS0095612	Silvery flower (tetraploid) 3	3.004
	CNS0095613	Golden flower (tetraploid) 1	0.972
	CNS0095614	Golden flower (tetraploid) 2	4.198
	CNS0095615	Golden flower (tetraploid) 3	1.453
CRA001975	CRR073297	Stem 1	12.462
	CRR073298	Stem 2	11.977
	CRR073299	Stem 3	13.332
	CRR073300	Leaf 1	14.353
	CRR073301	Leaf 2	13.136
	CRR073302	Leaf 3	11.145
	CRR073303	Juvenile bud 1	11.245
	CRR073304	Juvenile bud 2	5.625
	CRR073305	Juvenile bud 3	14.438
	CRR073306	Third green 1	1.817
	CRR073307	Third green 2	1.159
	CRR073308	Third green 3	2.065
	CRR073309	Second white 1	2.087
	CRR073310	Second white 2	1.074
	CRR073311	Second white 3	0.835
	CRR073312	Silver flowering 1	0.332
	CRR073313	Silver flowering 2	0.300
	CRR073314	Silver flowering 3	0.751
	CRR073315	Gold flowering 1	4.911
	CRR073316	Gold flowering 2	6.742
	CRR073317	Gold flowering 3	6.951
	CRR073318	Tawny withering 1	10.603
	CRR073319	Tawny withering 2	11.718
	CRR073320	Tawny withering 3	8.294