Gene detail

Detail information of GWHGAAZE014631

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099313.1	8.02594E-81	PREDICTED: transcription factor MYB44-like [Sesamum indicum]
Swissprot	tr\|Q9FDW1\|MYB44_ARATH	4E-68	Transcription factor MYB44
trEMBL	tr\|V5T7X2\|V5T7X2_ARAHY	2E-78	Putative MYB-related protein 20 {ECO:0000313\|EMBL:AHB59606.1}
TAIR10	AT4G37260.1	6E-52	myb domain protein 73

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	15640448	15640987	+
GWHAAZE00000004	mRNA	15640448	15640987	+
GWHAAZE00000004	exon	15640448	15640987	+
GWHAAZE00000004	CDS	15640448	15640987	+

Transcript Sequence
>GWHTAAZE014645 ATGGATCGGATCAAAGGTCCATGGAGCCCCGAAGAGGACGAATTGCTTAACCAGCTCGTCAGCAAATACGGTCCTCGAAACTGGTCACTCATCAGCAGAACCATACAGGGTCGATCCGGTAAGTCGTGCCGGTTAAGGTGGTGCAACCAGCTCTCCCCTCAGGTTGAGCACCGCCCCTTCACTCCCGACGAAGACGAAACCATCGTTAGGGCCCACGAGAGGTTCGGTAACAAATGGGCCACCATAGCCCGACTCCTCTCCGGAAGGACCGACAACGCCGTCAAGAACCACTGGAACTCTACACTCAAGAGGAAGAAGTCTTCCAATTCAATGTTGACTTCAGCTGAATGGAACGAGCAACAACAACAACAACTGCCTCCCAAGAGATCCGCTAGTACCGGGTCGGGCAGTCCATCCGGATCAGATGCTAGCGAATCGAGTCCTGGTGCAATGTCCTCGTCGCATATATTCAGACCTGTAGCAAGGATAAGTGGTGTTTTTGCCCCGCAAATCGAGCATGATCCTCCGACTTCTCTTAGT

Network for GWHGAAZE014631

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13921.7	Myb_DNA-bind_6	8	66	1.10E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.118
	SRR3591706	second leaf	8.923
	SRR3591707	mature leaf	21.877
	SRR3591708	Shoot apex	10.301
	SRR3591709	Stem	55.444
	SRR3591710	White floral bud	90.708
	SRR3591711	White flower	136.942
	SRR3591712	Green floral bud	10.507
	SRR3591713	Yellow flower	27.620
SRP173429	SRR8316895	Juvenile bud stage	17.770
	SRR8316896	Juvenile bud stage	4.570
	SRR8316897	Juvenile bud stage	9.414
	SRR8316894	Third green stage	2.853
	SRR8316900	Third green stage	0.960
	SRR8316901	Third green stage	1.606
	SRR8316898	Complete white stage	9.623
	SRR8316899	Complete white stage	27.283
	SRR8316903	Complete white stage	20.369
	SRR8316902	Silver flowering stage	12.290
	SRR8316904	Silver flowering stage	11.291
	SRR8316905	Silver flowering stage	4.060
	SRR8316906	Gold flowering stage	8.241
	SRR8316907	Gold flowering stage	15.924
	SRR8316908	Gold flowering stage	31.584
SRP132670	SRR6706286	Control	10.327
	SRR6706287	Light intensity 50%	11.773
	SRR6706288	Light intensity 20%	11.025
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.882
	CNS0095593	Slightly white alabastrum(diploid) 2	20.927
	CNS0095594	Slightly white alabastrum(diploid) 3	21.139
	CNS0095595	Whole white alabastrum(diploid) 2	24.526
	CNS0095596	Whole white alabastrum(diploid) 3	2.240
	CNS0095597	Whole white alabastrum(diploid) 4	17.334
	CNS0095598	Silvery flower (diploied) 1	91.145
	CNS0095599	Silvery flower (diploied) 2	61.067
	CNS0095600	Silvery flower (diploied) 3	45.981
	CNS0095601	Golden flower (diploid) 1	70.321
	CNS0095602	Golden flower (diploid) 2	70.508
	CNS0095603	Golden flower (diploid) 3	73.400
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.394
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.303
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.569
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.442
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.457
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.285
	CNS0095610	Silvery flower (tetraploid) 1	56.095
	CNS0095611	Silvery flower (tetraploid) 2	51.623
	CNS0095612	Silvery flower (tetraploid) 3	159.777
	CNS0095613	Golden flower (tetraploid) 1	22.687
	CNS0095614	Golden flower (tetraploid) 2	29.856
	CNS0095615	Golden flower (tetraploid) 3	10.885
CRA001975	CRR073297	Stem 1	21.473
	CRR073298	Stem 2	13.788
	CRR073299	Stem 3	17.454
	CRR073300	Leaf 1	7.665
	CRR073301	Leaf 2	10.178
	CRR073302	Leaf 3	12.020
	CRR073303	Juvenile bud 1	16.080
	CRR073304	Juvenile bud 2	11.984
	CRR073305	Juvenile bud 3	23.306
	CRR073306	Third green 1	393.014
	CRR073307	Third green 2	430.734
	CRR073308	Third green 3	462.270
	CRR073309	Second white 1	194.635
	CRR073310	Second white 2	167.087
	CRR073311	Second white 3	107.823
	CRR073312	Silver flowering 1	42.893
	CRR073313	Silver flowering 2	58.257
	CRR073314	Silver flowering 3	52.554
	CRR073315	Gold flowering 1	32.002
	CRR073316	Gold flowering 2	66.389
	CRR073317	Gold flowering 3	31.097
	CRR073318	Tawny withering 1	111.701
	CRR073319	Tawny withering 2	174.488
	CRR073320	Tawny withering 3	125.670