Gene detail

Detail information of GWHGAAZE014614

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652789.1	2.8871E-155	PREDICTED: OTU domain-containing protein 3 isoform X1 [Vitis vinifera]
trEMBL	tr\|F6H4H8\|F6H4H8_VITVI	5E-156	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47050.1}
TAIR10	AT5G67170.1	8E-99	SEC-C motif-containing protein / OTU-like cysteine protease family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	15261192	15266904	+
GWHAAZE00000004	mRNA	15261192	15266904	+
GWHAAZE00000004	exon	15261192	15261298	+
GWHAAZE00000004	exon	15261419	15261494	+
GWHAAZE00000004	exon	15262679	15262828	+
GWHAAZE00000004	exon	15263953	15264014	+
GWHAAZE00000004	exon	15265446	15265572	+
GWHAAZE00000004	exon	15265668	15265817	+
GWHAAZE00000004	exon	15265913	15266033	+
GWHAAZE00000004	exon	15266558	15266685	+
GWHAAZE00000004	exon	15266794	15266904	+
GWHAAZE00000004	CDS	15261192	15261298	+
GWHAAZE00000004	CDS	15261419	15261494	+
GWHAAZE00000004	CDS	15262679	15262828	+
GWHAAZE00000004	CDS	15263953	15264014	+
GWHAAZE00000004	CDS	15265446	15265572	+
GWHAAZE00000004	CDS	15265668	15265817	+
GWHAAZE00000004	CDS	15265913	15266033	+
GWHAAZE00000004	CDS	15266558	15266685	+
GWHAAZE00000004	CDS	15266794	15266904	+

Transcript Sequence
>GWHTAAZE014628 ATTAAAAGGCATGGAAAGCAAGCCGTCACATCTGAATTTCAGGCTCAGCTTGATGCACTAGGGTTAAAAATCATTCAAGTAACTGCTGATGGTAACTGTTTCTTCAGGGCACTAGGAGATCAGTTGGAAGGCAATGAGGAAGAACATGTGAAGTACCGCAGCATGGTGGTACACTTTATTCAGGAGAATCGTGATATGTTTGAGCCTTTCATCGAAGATGACATACCATTTGATGAATATTGTCAGTCCATGGAAAAAGATGGCACATGGGCTGGGCATATGGAATTGCAAGCTGCTTCTCTTGTTACTCATAGTAATATATGCATACACCGTAATATGTCACCTCGCTGGTACATACATAATTTTGATAACCATCAGGCTCGAATGATTCATCTGTCTTATCATGACGGGGAACACTATAATAGTGTACGCTCAAAGGAAGACACTTGCACTGGACCAGCTAGGCCAATCACACTAAAGGTGTTTGTCTTTGTCTTTGCCTTTGTCATTGTTAATTTTAATGTTGATGCTGACCTTTCAGCAAAATCTCAGCAAGAAAAAGTAGCTGCCACTAAGTCTAAAGGAGGAGCTGGTAAGAATAATATTCTTTCAGGGACTATTAAAACGGTCATGGCCGGAAGTGGATGTGAGATTGGGGAAAAAGTTGAGCAGATTTTGCAACAAGTTGGTGGTGATGTTGATGCTGCAATAGAGTTTCTCATAGCTGAAAAAACAACAGAAGGGTATGTTGTTAAAAATGGTGAAGCTGCTTGTACAGCAGAAACTTCTAATGGTGAAGTTCAAAATGGATTCCCAATGTCCCAGAAGGATGAATCTGAAGGCATTTCATGCAAACAGGATCCGTTATTGAATGACATAGAAAGAACTCCCGATATTAATAGCTTGGAACATGATGAAAAGCGAATCCCAAGAAACAAGGCTTGTCCATGTGGTTCAAAAAAGAAATACAAGTCATGTTGTGGATCAGTTGCGGGGAAATCCTCTAATAAATTTGCAGTGTATGTTTCTTGA

Network for GWHGAAZE014614

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02338.20	OTU	29	140	6.70E-14
PF02810.16	SEC-C	311	328	5.40E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	OTU

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.895
	SRR3591706	second leaf	5.278
	SRR3591707	mature leaf	5.485
	SRR3591708	Shoot apex	6.636
	SRR3591709	Stem	10.827
	SRR3591710	White floral bud	7.367
	SRR3591711	White flower	6.809
	SRR3591712	Green floral bud	6.203
	SRR3591713	Yellow flower	6.532
SRP173429	SRR8316895	Juvenile bud stage	4.810
	SRR8316896	Juvenile bud stage	7.125
	SRR8316897	Juvenile bud stage	2.710
	SRR8316894	Third green stage	3.031
	SRR8316900	Third green stage	6.376
	SRR8316901	Third green stage	5.862
	SRR8316898	Complete white stage	2.273
	SRR8316899	Complete white stage	7.729
	SRR8316903	Complete white stage	4.920
	SRR8316902	Silver flowering stage	4.068
	SRR8316904	Silver flowering stage	5.522
	SRR8316905	Silver flowering stage	2.477
	SRR8316906	Gold flowering stage	8.402
	SRR8316907	Gold flowering stage	8.176
	SRR8316908	Gold flowering stage	9.683
SRP132670	SRR6706286	Control	4.310
	SRR6706287	Light intensity 50%	4.623
	SRR6706288	Light intensity 20%	4.624
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.262
	CNS0095593	Slightly white alabastrum(diploid) 2	4.970
	CNS0095594	Slightly white alabastrum(diploid) 3	5.763
	CNS0095595	Whole white alabastrum(diploid) 2	7.290
	CNS0095596	Whole white alabastrum(diploid) 3	8.046
	CNS0095597	Whole white alabastrum(diploid) 4	7.779
	CNS0095598	Silvery flower (diploied) 1	9.127
	CNS0095599	Silvery flower (diploied) 2	6.101
	CNS0095600	Silvery flower (diploied) 3	5.911
	CNS0095601	Golden flower (diploid) 1	5.948
	CNS0095602	Golden flower (diploid) 2	6.580
	CNS0095603	Golden flower (diploid) 3	6.561
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.794
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.686
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.086
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.665
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.148
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.626
	CNS0095610	Silvery flower (tetraploid) 1	6.854
	CNS0095611	Silvery flower (tetraploid) 2	7.645
	CNS0095612	Silvery flower (tetraploid) 3	5.654
	CNS0095613	Golden flower (tetraploid) 1	4.872
	CNS0095614	Golden flower (tetraploid) 2	6.297
	CNS0095615	Golden flower (tetraploid) 3	6.707
CRA001975	CRR073297	Stem 1	5.496
	CRR073298	Stem 2	4.160
	CRR073299	Stem 3	2.423
	CRR073300	Leaf 1	4.497
	CRR073301	Leaf 2	4.604
	CRR073302	Leaf 3	1.976
	CRR073303	Juvenile bud 1	1.115
	CRR073304	Juvenile bud 2	2.166
	CRR073305	Juvenile bud 3	2.401
	CRR073306	Third green 1	0.130
	CRR073307	Third green 2	0.582
	CRR073308	Third green 3	0.564
	CRR073309	Second white 1	1.000
	CRR073310	Second white 2	2.952
	CRR073311	Second white 3	0.418
	CRR073312	Silver flowering 1	1.017
	CRR073313	Silver flowering 2	1.246
	CRR073314	Silver flowering 3	0.706
	CRR073315	Gold flowering 1	1.263
	CRR073316	Gold flowering 2	3.126
	CRR073317	Gold flowering 3	0.083
	CRR073318	Tawny withering 1	1.795
	CRR073319	Tawny withering 2	1.465
	CRR073320	Tawny withering 3	3.474