Gene detail

Detail information of GWHGAAZE014423

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004233667.1	3.92999E-79	PREDICTED: zinc finger protein ZAT1-like [Solanum lycopersicum]
Swissprot	tr\|Q9SHD0\|ZAT4_ARATH	1E-10	Zinc finger protein ZAT4
trEMBL	tr\|K4BC22\|K4BC22_SOLLC	1E-79	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g088670.1.1}
TAIR10	AT1G26610.1	3E-17	C2H2-like zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	11695600	11697114	-
GWHAAZE00000004	mRNA	11695600	11697114	-
GWHAAZE00000004	exon	11695600	11697114	-
GWHAAZE00000004	CDS	11695600	11697114	-

Transcript Sequence
>GWHTAAZE014437 ATGATGGAAGAAGATCAAGAACAGAGGTTCGCTTGCAGGTTCTGCAACAAGACTTTCGCTAATGGCAAGTCTTTGGGAGGTCATATGAGGGGCCATTTGGCCTTGATTTCATCCCAAAAAACTGAAGAGATCGATAATGGCAACAAGGGTTTTGAAGGCTATGGCCTTAGACAGAATCAGAAGAAGGCCTTGAAGGTTTTAGAGCCACTTGATGAAGAAGAGAAGAACACATCAATGGGTTGTGAAGATGGCTATTATGGACTAAGAGAGAACCCAAAGAAATCTTGGAGGGCTTCTTCTAGTTCAAAACCCAATGTTTTGGTGAAGAATGAAAATATAATCACCAATCTTTGTAAAGAATGTGGGAAAGGGTTTCCTTCATTGAGAGCTCTTTCGGGTCATATGAGGTGCCATTCAATCAAAGGAAAAGAAGAAAATATGTGCAAGAAATGTGGGAAAGGGTTTGATTCAATGAGAGCTTTGTTTGGTCACATGAGGAGTCACTCCAAAAGATCTAGGGCCTCTTTAGATGAATCTGCAGAAGAGAGGAAATCGGATTATGAGCTGGCTTTTGCAATTCCCAAGAAGCGATTGAGGACTAGGTACAAGGTTACTTCTAATTCAAACCCTTCTTGTTCCAACTTGAATGCATCTTGTTCATCATCTATTGTTACTGGTACTGATAATGAAGTAGAAGAGGTTGCTATGTGTTTGATGTTGCTGTCTAGAGGCGTGAAGAATTGGGATGATTTTAATTCGGTTATTAATACTTCTAATAATGATTCTGTAATTCTTGAGGCTCAATCGTTGCTTAAGAGCCATGGGAATACTGAAAATGATGATGATGATGATGATGATGCTGATGAGACAGAGAAACCAATAGAGAATGCTTTGATTGTAAAGAATGTATCTGAATTTTGCCTTTTGGAATCTGGGTCTGCAATTGATGATTTAAATAAGGCCAAATTGGGAGTTTCTGTTGATGAGTTTCTTAGCTGTGATAAATCCAAGCCTTCACAGGATGGCGAATTTGCTAATGAGTGTGTTGAACTAGAATTGGAGAAGGATATGGTTAGTGACCTTGAATTGAATCAGGGGGATTCAGACTTGGTGAAATCTAGTCCATTCGATGAACCCATGTTTGACGGTCATGACCTTGATTTGGGGGAAAATTCTTTGAGAATTCAAATCCATGAGAATTCAGTTGAGCAAGTAGGCTGTGAACTGATGGTGGCAAGTAATGAGTTGAAGAAGAACAAGGACCACGAGTGCTCAATCTGTTTCAAGGTCTTTGCGTCGGGTCAAGCCTTGGGTGGCCACAAAAGGGCTCATTACATTGATCAAACCAGAGCTAAAGAGGCTATGCTAATAAACCAAGAGCTACCCGATATCCATAATATGTTTGATCTTAATCTCCCATTGTCTTTGGAAGATGGGGCTGCAACTGATGTTGGATTTAAGCCATGGTGGATTGGAGGCGATCATGAGTATGAGCCACTGGTGATGTTCAATTGA

Network for GWHGAAZE014423

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13912.7	zf-C2H2_6	10	33	6.70E-05
PF13912.7	zf-C2H2_6	118	139	3.70E-07
PF13912.7	zf-C2H2_6	148	170	5.90E-05
PF13912.7	zf-C2H2_6	422	445	7.00E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.830
	SRR3591706	second leaf	0.839
	SRR3591707	mature leaf	1.037
	SRR3591708	Shoot apex	0.485
	SRR3591709	Stem	6.866
	SRR3591710	White floral bud	1.138
	SRR3591711	White flower	0.407
	SRR3591712	Green floral bud	2.323
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.919
	SRR8316896	Juvenile bud stage	1.045
	SRR8316897	Juvenile bud stage	1.171
	SRR8316894	Third green stage	0.838
	SRR8316900	Third green stage	0.923
	SRR8316901	Third green stage	1.602
	SRR8316898	Complete white stage	0.208
	SRR8316899	Complete white stage	6.135
	SRR8316903	Complete white stage	0.294
	SRR8316902	Silver flowering stage	0.214
	SRR8316904	Silver flowering stage	0.060
	SRR8316905	Silver flowering stage	0.033
	SRR8316906	Gold flowering stage	0.121
	SRR8316907	Gold flowering stage	0.089
	SRR8316908	Gold flowering stage	0.067
SRP132670	SRR6706286	Control	0.511
	SRR6706287	Light intensity 50%	0.725
	SRR6706288	Light intensity 20%	0.750
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.400
	CNS0095593	Slightly white alabastrum(diploid) 2	0.884
	CNS0095594	Slightly white alabastrum(diploid) 3	2.046
	CNS0095595	Whole white alabastrum(diploid) 2	0.802
	CNS0095596	Whole white alabastrum(diploid) 3	1.493
	CNS0095597	Whole white alabastrum(diploid) 4	0.759
	CNS0095598	Silvery flower (diploied) 1	1.267
	CNS0095599	Silvery flower (diploied) 2	0.738
	CNS0095600	Silvery flower (diploied) 3	0.732
	CNS0095601	Golden flower (diploid) 1	0.491
	CNS0095602	Golden flower (diploid) 2	0.980
	CNS0095603	Golden flower (diploid) 3	1.230
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.462
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.453
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.919
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.751
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.104
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.689
	CNS0095610	Silvery flower (tetraploid) 1	0.362
	CNS0095611	Silvery flower (tetraploid) 2	0.137
	CNS0095612	Silvery flower (tetraploid) 3	0.069
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.162
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.065
	CRR073298	Stem 2	1.394
	CRR073299	Stem 3	1.331
	CRR073300	Leaf 1	1.400
	CRR073301	Leaf 2	1.492
	CRR073302	Leaf 3	1.125
	CRR073303	Juvenile bud 1	1.201
	CRR073304	Juvenile bud 2	0.459
	CRR073305	Juvenile bud 3	1.915
	CRR073306	Third green 1	0.056
	CRR073307	Third green 2	0.211
	CRR073308	Third green 3	0.121
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.492
	CRR073316	Gold flowering 2	2.499
	CRR073317	Gold flowering 3	1.316
	CRR073318	Tawny withering 1	0.458
	CRR073319	Tawny withering 2	0.365
	CRR073320	Tawny withering 3	1.297