Detail information of GWHGAAZE014411


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009589735.10PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
Swissprottr|O65718|CNGC2_ARATH0Cyclic nucleotide-gated ion channel 2
trEMBLtr|U5FP62|U5FP62_POPTR0Uncharacterized protein {ECO:0000313|EMBL:ERP51142.1}
TAIR10AT5G15410.20Cyclic nucleotide-regulated ion channel family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1156223211567795-
GWHAAZE00000004mRNA1156223211567795-
GWHAAZE00000004exon1156223211562963-
GWHAAZE00000004exon1156401711564083-
GWHAAZE00000004exon1156422211564664-
GWHAAZE00000004exon1156478211564871-
GWHAAZE00000004exon1156529211565528-
GWHAAZE00000004exon1156577311565884-
GWHAAZE00000004exon1156612211566420-
GWHAAZE00000004exon1156670011566801-
GWHAAZE00000004exon1156717811567795-
GWHAAZE00000004CDS1156717811567795-
GWHAAZE00000004CDS1156670011566801-
GWHAAZE00000004CDS1156612211566420-
GWHAAZE00000004CDS1156577311565884-
GWHAAZE00000004CDS1156529211565528-
GWHAAZE00000004CDS1156478211564871-
GWHAAZE00000004CDS1156422211564664-
GWHAAZE00000004CDS1156401711564083-
GWHAAZE00000004CDS1156223211562963-
Transcript Sequence

Network for GWHGAAZE014411

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0278GO:0055085 transmembrane transport GOslim:biological_process
GO:0006816 calcium ion transport GOslim:biological_process
GO:0015369 calcium:proton antiporter activity GOslim:molecular_function
GO:0006811 ion transport GOslim:biological_process
GO:0005741 mitochondrial outer membrane GOslim:cellular_component
GO:0005216 ion channel activity GOslim:molecular_function
GO:0008324 cation transmembrane transporter activity GOslim:molecular_function
GO:0006812 cation transport GOslim:biological_process
GO:0016021 integral component of membrane GOslim:cellular_component


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00520.32Ion_trans983774.80E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05391CNGC Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0006811biological_procession transport
GO:0055085biological_processtransmembrane transport
GO:0016020cellular_componentmembrane
GO:0005216molecular_functionion channel activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.347
SRR3591706second leaf3.706
SRR3591707mature leaf1.816
SRR3591708Shoot apex1.586
SRR3591709Stem8.863
SRR3591710White floral bud1.223
SRR3591711White flower3.060
SRR3591712Green floral bud0.119
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.783
SRR8316896Juvenile bud stage 0.133
SRR8316897Juvenile bud stage 0.067
SRR8316894Third green stage 0.401
SRR8316900Third green stage 0.063
SRR8316901Third green stage 0.131
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.592
SRR8316903Complete white stage 1.254
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.349
SRR6706287Light intensity 50%0.504
SRR6706288Light intensity 20%0.469
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.446
CNS0095593Slightly white alabastrum(diploid) 20.259
CNS0095594Slightly white alabastrum(diploid) 30.595
CNS0095595Whole white alabastrum(diploid) 20.799
CNS0095596Whole white alabastrum(diploid) 30.093
CNS0095597Whole white alabastrum(diploid) 40.909
CNS0095598Silvery flower (diploied) 15.105
CNS0095599Silvery flower (diploied) 23.316
CNS0095600Silvery flower (diploied) 30.894
CNS0095601Golden flower (diploid) 11.210
CNS0095602Golden flower (diploid) 21.324
CNS0095603Golden flower (diploid) 31.411
CNS0095604Slightly white alabastrum(tetraploid) 11.944
CNS0095605Slightly white alabastrum(tetraploid) 20.338
CNS0095606Slightly white alabastrum(tetraploid) 39.329
CNS0095607Whole white alabastrum(tetraploid) 12.384
CNS0095608Whole white alabastrum(tetraploid) 20.167
CNS0095609Whole white alabastrum(tetraploid) 30.079
CNS0095610Silvery flower (tetraploid) 10.016
CNS0095611Silvery flower (tetraploid) 22.552
CNS0095612Silvery flower (tetraploid) 30.276
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.001
CNS0095615Golden flower (tetraploid) 30.064
CRA001975CRR073297Stem 10.157
CRR073298Stem 20.152
CRR073299Stem 30.038
CRR073300Leaf 10.021
CRR073301Leaf 20.223
CRR073302Leaf 30.050
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.019
CRR073308Third green 30.052
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.001
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.744
CRR073316Gold flowering 21.179
CRR073317Gold flowering 31.205
CRR073318Tawny withering 10.112
CRR073319Tawny withering 20.446
CRR073320Tawny withering 30.100