Gene detail

Detail information of GWHGAAZE014386

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283941.1	0	PREDICTED: pectinesterase 31 [Vitis vinifera]
Swissprot	tr\|Q9LVQ0\|PME31_ARATH	0	Pectinesterase 31
trEMBL	tr\|D7SXF6\|D7SXF6_VITVI	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT3G29090.1	1E-154	pectin methylesterase 31

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	11315967	11319175	+
GWHAAZE00000004	mRNA	11315967	11319175	+
GWHAAZE00000004	exon	11315967	11316206	+
GWHAAZE00000004	exon	11316300	11316404	+
GWHAAZE00000004	exon	11317145	11317222	+
GWHAAZE00000004	exon	11317467	11317654	+
GWHAAZE00000004	exon	11318629	11318802	+
GWHAAZE00000004	exon	11319013	11319175	+
GWHAAZE00000004	CDS	11315967	11316206	+
GWHAAZE00000004	CDS	11316300	11316404	+
GWHAAZE00000004	CDS	11317145	11317222	+
GWHAAZE00000004	CDS	11317467	11317654	+
GWHAAZE00000004	CDS	11318629	11318802	+
GWHAAZE00000004	CDS	11319013	11319175	+

Transcript Sequence
>GWHTAAZE014400 ATGGCCATAGTGGTCACTGTCTCTCAGGACGGCACCGGTGACTTCCGAACCGTACAAGAAGCAATAGACGCCGTTCCACTCTGCAACACTTGCCGTACGGTCGTTCGAGTCTCGCCCGGGATTTACAAGCAGCCGGTTTACGTTCCCAAGACCAAAAACCTCATCACTCTCGCCGGTTTGCGTCCTGAAGATACTATCCTCACTTGGAACAATACTGCCTCCAAAATTGATCACCATCAGGCATCGCGCGTGATCGGAACCGGGACTTTTGGGTGCGGGAGTACTATCGTTGAAGGGGAGGATTTCATTGCTGAGAATATCACTTTTGAGAATTCGGCTCCAGAGGGTTCGGGGCAGGCCGTGGCAATTAGAGTGACAGCGGATCGTTGTGCATTCTACAGTTGCAGATTTCTTGGATATCAGGATACTCTGTACTTGCATTACGGCAAACAATATTTAAAAGACTGCTACATAGAAGGAAGTGTGGACTTTATTTTTGGAAATAGCACTGCTCTTTTGGAGCATTGCCATATCCATTGCAAATCAGCTGGATACATAACTGCTCAGAGTAGGAAATCTTCTCAAGAGACAACTGGATACGTATTCTTGAGATGTGTGATCACTGGCAATGGAGGAACATCGTACACATATCTTGGACGACCGTGGGGACCTTTTGGAAGGGTGGTTTTTGCATACACATGGATGGATGCATGCATCAAACACCACGGTTGGAATAACTGGGGCAAAGCCGAGAATGAGCGAAATGCTTGCTTTTACGAGTACAGGTGCTTTGGGCCAGGTAGTTGCCCAACAAGACGCGTAAATTGGGCTAGAGAACTAGTAGATGAAGAAGCAGAACAATTTCTCCTGCACGGTTTCATTGATCCAGATCCCGGCAGACCTTGGCTGGCCCAAAGAATGGCACTGAGGATACCTTATTCAGCTTAG

Network for GWHGAAZE014386

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01095.20	Pectinesterase	5	295	4.30E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	72.515
	SRR3591706	second leaf	36.118
	SRR3591707	mature leaf	26.862
	SRR3591708	Shoot apex	66.652
	SRR3591709	Stem	65.818
	SRR3591710	White floral bud	63.703
	SRR3591711	White flower	79.569
	SRR3591712	Green floral bud	51.159
	SRR3591713	Yellow flower	73.258
SRP173429	SRR8316895	Juvenile bud stage	40.208
	SRR8316896	Juvenile bud stage	62.204
	SRR8316897	Juvenile bud stage	28.506
	SRR8316894	Third green stage	25.526
	SRR8316900	Third green stage	80.400
	SRR8316901	Third green stage	75.782
	SRR8316898	Complete white stage	54.613
	SRR8316899	Complete white stage	118.388
	SRR8316903	Complete white stage	67.799
	SRR8316902	Silver flowering stage	42.915
	SRR8316904	Silver flowering stage	53.850
	SRR8316905	Silver flowering stage	27.292
	SRR8316906	Gold flowering stage	99.009
	SRR8316907	Gold flowering stage	98.401
	SRR8316908	Gold flowering stage	124.922
SRP132670	SRR6706286	Control	118.498
	SRR6706287	Light intensity 50%	106.826
	SRR6706288	Light intensity 20%	112.726
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	57.570
	CNS0095593	Slightly white alabastrum(diploid) 2	71.887
	CNS0095594	Slightly white alabastrum(diploid) 3	59.517
	CNS0095595	Whole white alabastrum(diploid) 2	57.157
	CNS0095596	Whole white alabastrum(diploid) 3	54.154
	CNS0095597	Whole white alabastrum(diploid) 4	44.271
	CNS0095598	Silvery flower (diploied) 1	62.812
	CNS0095599	Silvery flower (diploied) 2	72.596
	CNS0095600	Silvery flower (diploied) 3	91.868
	CNS0095601	Golden flower (diploid) 1	51.267
	CNS0095602	Golden flower (diploid) 2	76.962
	CNS0095603	Golden flower (diploid) 3	79.345
	CNS0095604	Slightly white alabastrum(tetraploid) 1	60.679
	CNS0095605	Slightly white alabastrum(tetraploid) 2	52.859
	CNS0095606	Slightly white alabastrum(tetraploid) 3	87.308
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.093
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.221
	CNS0095609	Whole white alabastrum(tetraploid) 3	57.636
	CNS0095610	Silvery flower (tetraploid) 1	94.265
	CNS0095611	Silvery flower (tetraploid) 2	92.296
	CNS0095612	Silvery flower (tetraploid) 3	113.649
	CNS0095613	Golden flower (tetraploid) 1	52.929
	CNS0095614	Golden flower (tetraploid) 2	80.208
	CNS0095615	Golden flower (tetraploid) 3	41.845
CRA001975	CRR073297	Stem 1	47.072
	CRR073298	Stem 2	55.240
	CRR073299	Stem 3	53.648
	CRR073300	Leaf 1	65.630
	CRR073301	Leaf 2	66.501
	CRR073302	Leaf 3	67.206
	CRR073303	Juvenile bud 1	81.833
	CRR073304	Juvenile bud 2	71.392
	CRR073305	Juvenile bud 3	75.380
	CRR073306	Third green 1	55.837
	CRR073307	Third green 2	50.801
	CRR073308	Third green 3	48.702
	CRR073309	Second white 1	76.504
	CRR073310	Second white 2	56.227
	CRR073311	Second white 3	49.862
	CRR073312	Silver flowering 1	38.180
	CRR073313	Silver flowering 2	41.507
	CRR073314	Silver flowering 3	33.621
	CRR073315	Gold flowering 1	28.406
	CRR073316	Gold flowering 2	33.891
	CRR073317	Gold flowering 3	25.036
	CRR073318	Tawny withering 1	58.442
	CRR073319	Tawny withering 2	56.811
	CRR073320	Tawny withering 3	57.604