Gene detail

Detail information of GWHGAAZE014354

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002283027.1	PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Vitis vinifera]
Swissprot	tr\|P35614\|ERF1Z_ARATH	Eukaryotic peptide chain release factor subunit 1-3
trEMBL	tr\|F6H1H5\|F6H1H5_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45934.1}
TAIR10	AT3G26618.1	eukaryotic release factor 1-3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	10846960	10848273	+
GWHAAZE00000004	mRNA	10846960	10848273	+
GWHAAZE00000004	exon	10846960	10848273	+
GWHAAZE00000004	CDS	10846960	10848273	+

Transcript Sequence
>GWHTAAZE014368 ATGGCAGATGTTCATGAAACTGACAAGAACATCGAGGTATGGAAGATCAAGAAGCTCATCAAAGCACTCGAAGCTGCTCGAGGCAATGGCACCAGCATGATTTCTCTTATCATGCCTCCACGCGATCAAGTATCTAGGGTTACAAAGATGCTGGGAGATGAATTTGGCACCGCTTCAAACATAAAAAGTAGGGTTAATCGCCAGTCTGTTCTAGGTGCAATTACATCTGCTCAGCAGAGGCTTAAACTCTACAATAAGGTTCCTCCAAATGGGCTTGTGCTTTACACGGGAACTGTTGTAACCGATGACGGGAAGGAAAGGAAGGTTACAATTGACTTTGAGCCGTTCAGGCCTATAAATGCATCTCTTTATCTGTGTGACAACAAGTTCCATACAGAAGCACTGAATGAACTTTTAGAATCTGATGACAAGTTTGGTTTCATAGTTATGGACGGGAACGGGACCCTTTTTGGGACATTGAGTGGCAACACTAGAGACGTGCTTCACAAATTCTCTGTCGATCTCCCTAAGAAACATGGAAGAGGAGGGCAATCGGCTCTTCGATTTGCCCGTCTTCGAATGGAGAAGCGCCACAACTATGTGAGGAAAACAGCAGAGCTTGCCACACAGTTTTATATCAACCCTGCCACCAGCCAGCCCAATGTTTCGGGGCTGATACTTGCTGGGTCTGCTGACTTCAAAACCGAGCTGAGCCAGTCTGACATGTTTGATCCCCGTCTTCAGGCAAAAATCCTTAATGTTGTAGATGTTTCTTATGGGGGAGAAAATGGTTTCAATCAGGCAATTGAACTATCCTCAGAGATCCTTTCCAATGTGAAGTTTATACAGGAGAAGCGCTTGATCGGCAAGTACTTTGAGGAGATCAGTCAAGATACTGGGAAGTACGTGTTTGGTGTTGATGACACATTGAAAGCCTTGGAGATGGGTGCTGTTGAAATACTTATAGTGTGGGAAAATCTAGACATGGGTAGGTTTACGCTTAAAAATGTCACCACAGGTGAAGTGATCATAAAACACTTGAACAAGGAGCAAGAGGCTGATCAGAGTAACTTCAGGGATTCAGCCACTAAAGCCGAACTGGAGGTTCAAGAGAAGGTGTCACTGCTTGAGTGGTTTGCTAACGAGTACAGAAGGTTTGGGTGCATACTACAGTTTGTGACCAACAAATCGCAAGAGGGATCTCAGTTCTGTAGAGGGTTTGGTGGGATTGGGGGAATCCTTCGCTATCAGCTTGATATGCGATCCCTTGATGAGTTTTCTGATGATGGGGAAACTTACGAAGATTCTGAATAG

Network for GWHGAAZE014354

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03463.16	eRF1_1	17	138	5.20E-19
PF03464.16	eRF1_2	144	277	3.20E-41
PF03465.16	eRF1_3	281	418	1.20E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03265	ETF1, ERF1	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0006415	biological_process	translational termination
GO:0005737	cellular_component	cytoplasm
GO:0003747	molecular_function	translation release factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.401
	SRR3591706	second leaf	25.531
	SRR3591707	mature leaf	35.200
	SRR3591708	Shoot apex	17.100
	SRR3591709	Stem	36.695
	SRR3591710	White floral bud	118.339
	SRR3591711	White flower	176.139
	SRR3591712	Green floral bud	56.845
	SRR3591713	Yellow flower	116.205
SRP173429	SRR8316895	Juvenile bud stage	13.513
	SRR8316896	Juvenile bud stage	21.101
	SRR8316897	Juvenile bud stage	10.321
	SRR8316894	Third green stage	9.581
	SRR8316900	Third green stage	25.279
	SRR8316901	Third green stage	29.770
	SRR8316898	Complete white stage	38.682
	SRR8316899	Complete white stage	57.186
	SRR8316903	Complete white stage	65.876
	SRR8316902	Silver flowering stage	77.195
	SRR8316904	Silver flowering stage	81.234
	SRR8316905	Silver flowering stage	35.276
	SRR8316906	Gold flowering stage	87.435
	SRR8316907	Gold flowering stage	94.885
	SRR8316908	Gold flowering stage	107.864
SRP132670	SRR6706286	Control	48.180
	SRR6706287	Light intensity 50%	54.866
	SRR6706288	Light intensity 20%	55.170
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.877
	CNS0095593	Slightly white alabastrum(diploid) 2	19.696
	CNS0095594	Slightly white alabastrum(diploid) 3	22.332
	CNS0095595	Whole white alabastrum(diploid) 2	20.304
	CNS0095596	Whole white alabastrum(diploid) 3	17.792
	CNS0095597	Whole white alabastrum(diploid) 4	23.469
	CNS0095598	Silvery flower (diploied) 1	36.889
	CNS0095599	Silvery flower (diploied) 2	22.158
	CNS0095600	Silvery flower (diploied) 3	75.180
	CNS0095601	Golden flower (diploid) 1	19.812
	CNS0095602	Golden flower (diploid) 2	53.434
	CNS0095603	Golden flower (diploid) 3	53.870
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.097
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.173
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.334
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.281
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.399
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.831
	CNS0095610	Silvery flower (tetraploid) 1	109.631
	CNS0095611	Silvery flower (tetraploid) 2	78.356
	CNS0095612	Silvery flower (tetraploid) 3	94.413
	CNS0095613	Golden flower (tetraploid) 1	56.851
	CNS0095614	Golden flower (tetraploid) 2	66.470
	CNS0095615	Golden flower (tetraploid) 3	104.013
CRA001975	CRR073297	Stem 1	29.122
	CRR073298	Stem 2	26.901
	CRR073299	Stem 3	24.935
	CRR073300	Leaf 1	23.671
	CRR073301	Leaf 2	23.847
	CRR073302	Leaf 3	17.798
	CRR073303	Juvenile bud 1	20.940
	CRR073304	Juvenile bud 2	29.790
	CRR073305	Juvenile bud 3	26.738
	CRR073306	Third green 1	46.403
	CRR073307	Third green 2	50.583
	CRR073308	Third green 3	55.797
	CRR073309	Second white 1	32.492
	CRR073310	Second white 2	40.652
	CRR073311	Second white 3	36.061
	CRR073312	Silver flowering 1	41.756
	CRR073313	Silver flowering 2	40.152
	CRR073314	Silver flowering 3	60.102
	CRR073315	Gold flowering 1	49.912
	CRR073316	Gold flowering 2	74.470
	CRR073317	Gold flowering 3	25.501
	CRR073318	Tawny withering 1	35.833
	CRR073319	Tawny withering 2	38.289
	CRR073320	Tawny withering 3	27.745