Gene detail

Detail information of GWHGAAZE014340

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011097592.1	2.3825E-173	PREDICTED: probable trehalose-phosphate phosphatase J [Sesamum indicum]
Swissprot	tr\|Q5HZ05\|TPPJ_ARATH	9E-150	Probable trehalose-phosphate phosphatase J
trEMBL	tr\|B9HFI0\|B9HFI0_POPTR	7E-171	Trehalose 6-phosphate phosphatase {ECO:0000256\|RuleBase:RU361117}
TAIR10	AT5G10100.1	1E-117	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	10561051	10563439	-
GWHAAZE00000004	mRNA	10561051	10563439	-
GWHAAZE00000004	exon	10563143	10563439	-
GWHAAZE00000004	exon	10562762	10562902	-
GWHAAZE00000004	exon	10562584	10562655	-
GWHAAZE00000004	exon	10562222	10562326	-
GWHAAZE00000004	exon	10562054	10562110	-
GWHAAZE00000004	exon	10561848	10561949	-
GWHAAZE00000004	exon	10561664	10561741	-
GWHAAZE00000004	exon	10561412	10561552	-
GWHAAZE00000004	exon	10561051	10561110	-
GWHAAZE00000004	CDS	10563143	10563439	-
GWHAAZE00000004	CDS	10562762	10562902	-
GWHAAZE00000004	CDS	10562584	10562655	-
GWHAAZE00000004	CDS	10562222	10562326	-
GWHAAZE00000004	CDS	10562054	10562110	-
GWHAAZE00000004	CDS	10561848	10561949	-
GWHAAZE00000004	CDS	10561664	10561741	-
GWHAAZE00000004	CDS	10561412	10561552	-
GWHAAZE00000004	CDS	10561051	10561110	-

Transcript Sequence
>GWHTAAZE014354 ATGACTAACCAGAATGTAGTCGTTTCCGATGTCAAATCGGGCATCGGAATGTCCATAAAACTCGCTGTTTCCACCTCCGCCATGTTCTCTCCGGCGGCTCCAAAGCCACCGGCCGGCGGTGGCTATGTCCCTATTTCAAGAAAGAATTTGTTGAAGAAGCTAGAAACAGGAGCTGTTGGTGGTGGTGGTGGGGCGAAGGTCAATGCATGGGTTGATTCCATGAGAGCTTCTTCTCCTACTCGTAACAAATCTGCCCCACCTTCACTCTCTGAATCTGATGACAATAATTCTTGGATTGTTCAGCATCCTTCAGCTTTGGGCAAGTTCGATGATATAATGGAGGCTTCAAAAGGGAAACAAATAGTAATATTTCTTGATTATGATGGTACCCTTTCCCCCATTGTTGAAGATCCTGATCGAGCTTTTATGACAAATGAGATGAGGGCAGCTGTAAGGGACGTGGCCAAGTACTTCCCCACAGCCATCGTAAGCGGGAGGTGTAATGCTAAGGTTTGTAGCTTTGTAAGATTATCAGAGCTTTATTATGCGGGTAGTCATGGGATGGACATCAAGGGTCCAGCCAAAGGTCGCAAATACAAAAAGGTGAAAGCCACAGGTAATCAAGCGGTTCTCTTTCAACCCGCCAAAGATTTTCTACCCGTGATGGATGAGGTGTACAAAGCTTTATTGGAGAAAACCAAGTCCACCCCGGGAGCTAAGGTGGAAAATAACAAGTTCTGTTTATCTGTACATTTTCGCTGCGTAGAGGAAAAGAGATGGACTGATTTAGCAGAGCAAGTTAGATCAGTGCTGAAGGACTACCCAAAACTTAGATTAACTCAAGGGAGAAAGGTTTTAGAGGTTCGTCCAACGATAAAGTGGGACAAGGGAAAAGCACTCGAATTCTTGTTAGAGTCACTAGGATACGCTAGTTCAAATGATGTATTCCCGGTCTACATTGGAGATGATCGAACTGACGAGGATGCATTTAAGGTTATGTTCTTTTTGCGACGGTTGGTTGCTTGGAAACGGTCTTTACGGCGAGGACATTAG

Network for GWHGAAZE014340

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02358.17	Trehalose_PPase	124	333	3.30E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01087	otsB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005992	biological_process	trehalose biosynthetic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.688
	SRR3591706	second leaf	2.354
	SRR3591707	mature leaf	1.246
	SRR3591708	Shoot apex	0.364
	SRR3591709	Stem	2.538
	SRR3591710	White floral bud	10.922
	SRR3591711	White flower	47.989
	SRR3591712	Green floral bud	2.680
	SRR3591713	Yellow flower	25.409
SRP173429	SRR8316895	Juvenile bud stage	0.709
	SRR8316896	Juvenile bud stage	0.679
	SRR8316897	Juvenile bud stage	3.079
	SRR8316894	Third green stage	0.839
	SRR8316900	Third green stage	3.710
	SRR8316901	Third green stage	3.123
	SRR8316898	Complete white stage	11.405
	SRR8316899	Complete white stage	3.629
	SRR8316903	Complete white stage	18.080
	SRR8316902	Silver flowering stage	14.547
	SRR8316904	Silver flowering stage	15.594
	SRR8316905	Silver flowering stage	5.243
	SRR8316906	Gold flowering stage	38.219
	SRR8316907	Gold flowering stage	44.353
	SRR8316908	Gold flowering stage	26.512
SRP132670	SRR6706286	Control	1.256
	SRR6706287	Light intensity 50%	1.501
	SRR6706288	Light intensity 20%	1.109
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.459
	CNS0095593	Slightly white alabastrum(diploid) 2	3.372
	CNS0095594	Slightly white alabastrum(diploid) 3	2.222
	CNS0095595	Whole white alabastrum(diploid) 2	2.792
	CNS0095596	Whole white alabastrum(diploid) 3	4.101
	CNS0095597	Whole white alabastrum(diploid) 4	2.928
	CNS0095598	Silvery flower (diploied) 1	20.168
	CNS0095599	Silvery flower (diploied) 2	24.389
	CNS0095600	Silvery flower (diploied) 3	17.790
	CNS0095601	Golden flower (diploid) 1	5.060
	CNS0095602	Golden flower (diploid) 2	14.120
	CNS0095603	Golden flower (diploid) 3	16.463
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.470
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.581
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.375
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.855
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.363
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.417
	CNS0095610	Silvery flower (tetraploid) 1	44.041
	CNS0095611	Silvery flower (tetraploid) 2	7.083
	CNS0095612	Silvery flower (tetraploid) 3	11.786
	CNS0095613	Golden flower (tetraploid) 1	28.962
	CNS0095614	Golden flower (tetraploid) 2	20.819
	CNS0095615	Golden flower (tetraploid) 3	11.499
CRA001975	CRR073297	Stem 1	0.765
	CRR073298	Stem 2	0.983
	CRR073299	Stem 3	1.403
	CRR073300	Leaf 1	2.489
	CRR073301	Leaf 2	2.017
	CRR073302	Leaf 3	1.898
	CRR073303	Juvenile bud 1	1.255
	CRR073304	Juvenile bud 2	1.678
	CRR073305	Juvenile bud 3	1.656
	CRR073306	Third green 1	4.878
	CRR073307	Third green 2	8.478
	CRR073308	Third green 3	7.395
	CRR073309	Second white 1	7.529
	CRR073310	Second white 2	9.303
	CRR073311	Second white 3	6.590
	CRR073312	Silver flowering 1	9.598
	CRR073313	Silver flowering 2	9.262
	CRR073314	Silver flowering 3	13.475
	CRR073315	Gold flowering 1	0.363
	CRR073316	Gold flowering 2	1.895
	CRR073317	Gold flowering 3	0.517
	CRR073318	Tawny withering 1	3.248
	CRR073319	Tawny withering 2	4.443
	CRR073320	Tawny withering 3	0.836