Detail information of GWHGAAZE014325


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002307379.10cryptochrome 1 family protein [Populus trichocarpa]
Swissprottr|Q43125|CRY1_ARATH0Cryptochrome-1
trEMBLtr|B9H731|B9H731_POPTR0Cryptochrome 1 family protein {ECO:0000313|EMBL:EEE94375.1}
TAIR10AT4G08920.10cryptochrome 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1022482610228390-
GWHAAZE00000004mRNA1022482610228390-
GWHAAZE00000004exon1022807810228390-
GWHAAZE00000004exon1022727610227494-
GWHAAZE00000004exon1022604210226748-
GWHAAZE00000004exon1022482610225628-
GWHAAZE00000004CDS1022807810228390-
GWHAAZE00000004CDS1022727610227494-
GWHAAZE00000004CDS1022604210226748-
GWHAAZE00000004CDS1022484910225628-
GWHAAZE00000004three_prime_UTR1022482610224848-
Transcript Sequence

Network for GWHGAAZE014325

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0215GO:0009785 blue light signaling pathway GOslim:biological_process
GO:0009882 blue light photoreceptor activity GOslim:molecular_function
map04712 Circadian rhythm - plant
map03018 RNA degradation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00875.19DNA_photolyase71631.70E-39
PF03441.15FAD_binding_72834811.50E-62
PF12546.9Cryptochrome_C5106192.50E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12118CRY1 Circadian rhythm - plant map04712

Gene Ontology

GO term OntologyName
GO:0009785biological_processblue light signaling pathway
GO:0009882molecular_functionblue light photoreceptor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.054
SRR3591706second leaf16.229
SRR3591707mature leaf19.862
SRR3591708Shoot apex17.656
SRR3591709Stem16.627
SRR3591710White floral bud23.883
SRR3591711White flower22.737
SRR3591712Green floral bud22.438
SRR3591713Yellow flower19.663
SRP173429 SRR8316895Juvenile bud stage 7.152
SRR8316896Juvenile bud stage 10.864
SRR8316897Juvenile bud stage 4.218
SRR8316894Third green stage 6.359
SRR8316900Third green stage 19.619
SRR8316901Third green stage 18.351
SRR8316898Complete white stage 9.880
SRR8316899Complete white stage 26.003
SRR8316903Complete white stage 20.341
SRR8316902Silver flowering stage9.955
SRR8316904Silver flowering stage16.577
SRR8316905Silver flowering stage9.476
SRR8316906Gold flowering stage 32.597
SRR8316907Gold flowering stage 23.389
SRR8316908Gold flowering stage 28.657
SRP132670SRR6706286Control19.504
SRR6706287Light intensity 50%20.424
SRR6706288Light intensity 20%20.838
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.531
CNS0095593Slightly white alabastrum(diploid) 26.857
CNS0095594Slightly white alabastrum(diploid) 35.474
CNS0095595Whole white alabastrum(diploid) 28.880
CNS0095596Whole white alabastrum(diploid) 37.757
CNS0095597Whole white alabastrum(diploid) 46.870
CNS0095598Silvery flower (diploied) 117.221
CNS0095599Silvery flower (diploied) 210.277
CNS0095600Silvery flower (diploied) 330.088
CNS0095601Golden flower (diploid) 119.149
CNS0095602Golden flower (diploid) 228.648
CNS0095603Golden flower (diploid) 329.845
CNS0095604Slightly white alabastrum(tetraploid) 111.029
CNS0095605Slightly white alabastrum(tetraploid) 27.426
CNS0095606Slightly white alabastrum(tetraploid) 319.238
CNS0095607Whole white alabastrum(tetraploid) 17.521
CNS0095608Whole white alabastrum(tetraploid) 28.633
CNS0095609Whole white alabastrum(tetraploid) 313.945
CNS0095610Silvery flower (tetraploid) 129.157
CNS0095611Silvery flower (tetraploid) 237.746
CNS0095612Silvery flower (tetraploid) 340.949
CNS0095613Golden flower (tetraploid) 119.689
CNS0095614Golden flower (tetraploid) 228.558
CNS0095615Golden flower (tetraploid) 337.345
CRA001975CRR073297Stem 129.313
CRR073298Stem 231.839
CRR073299Stem 326.589
CRR073300Leaf 131.261
CRR073301Leaf 227.586
CRR073302Leaf 320.391
CRR073303Juvenile bud 119.326
CRR073304Juvenile bud 212.160
CRR073305Juvenile bud 332.713
CRR073306Third green 112.837
CRR073307Third green 27.264
CRR073308Third green 311.252
CRR073309Second white 111.976
CRR073310Second white 215.409
CRR073311Second white 316.264
CRR073312Silver flowering 110.538
CRR073313Silver flowering 26.744
CRR073314Silver flowering 36.702
CRR073315Gold flowering 117.311
CRR073316Gold flowering 233.969
CRR073317Gold flowering 318.794
CRR073318Tawny withering 111.863
CRR073319Tawny withering 29.612
CRR073320Tawny withering 310.459