Gene detail

Detail information of GWHGAAZE014297

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664348.1	0	PREDICTED: thylakoid lumenal 29 kDa protein, chloroplastic [Vitis vinifera]
Swissprot	tr\|Q9THX6\|TL29_SOLLC	2E-180	Thylakoid lumenal 29 kDa protein, chloroplastic (Precursor)
trEMBL	tr\|E0CRP4\|E0CRP4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19198.3}
TAIR10	AT4G09010.1	3E-126	ascorbate peroxidase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	9712819	9715833	+
GWHAAZE00000004	mRNA	9712819	9715833	+
GWHAAZE00000004	exon	9712819	9712908	+
GWHAAZE00000004	exon	9713034	9713135	+
GWHAAZE00000004	exon	9713612	9713696	+
GWHAAZE00000004	exon	9713793	9713827	+
GWHAAZE00000004	exon	9713989	9714054	+
GWHAAZE00000004	exon	9714134	9714174	+
GWHAAZE00000004	exon	9714330	9714460	+
GWHAAZE00000004	exon	9714612	9714718	+
GWHAAZE00000004	exon	9714927	9715064	+
GWHAAZE00000004	exon	9715335	9715469	+
GWHAAZE00000004	exon	9715559	9715833	+
GWHAAZE00000004	CDS	9712819	9712908	+
GWHAAZE00000004	CDS	9713034	9713135	+
GWHAAZE00000004	CDS	9713612	9713696	+
GWHAAZE00000004	CDS	9713793	9713827	+
GWHAAZE00000004	CDS	9713989	9714054	+
GWHAAZE00000004	CDS	9714134	9714174	+
GWHAAZE00000004	CDS	9714330	9714460	+
GWHAAZE00000004	CDS	9714612	9714718	+
GWHAAZE00000004	CDS	9714927	9715064	+
GWHAAZE00000004	CDS	9715335	9715469	+
GWHAAZE00000004	CDS	9715559	9715669	+
GWHAAZE00000004	three_prime_UTR	9715670	9715833	+

Transcript Sequence
>GWHTAAZE014311 ATGGGGTTGATTTCCTTTCTCTCAACGGTCCCTTCTTTGCTTCCGGTTGTACCTCTTCCATCTTGCACCACATACGCCCCTCATCATGCTGTAGCAATTCGTTGTAAAATAGAGGCGGTTGATGGTATTAGCAATGGGAATGAATTCAGCCGACGGGATGTTCTTAATTGCTTTGGGACTGCCATTGGCGTGGAACTTCTAGCAAGTTCAACCCCATTTGTTGAAGCAGCTAGTGCTGCAGATTTGATCCAACGCAGACAGCGCTCAGATTTTCAAACAAATATCAAGTCAACGCTTTATACATTGATAAAGGCAAACCAGGATCTCATCCCATCCATTCTAACTTTAGCACTTAATGATATTATGACTTATGACAAGGCTACAAAAACTGGGGGCCCAAATGGATCAATACACTTCAGCTCAGAGATTAGTAGACCAGAAAATAAAGGTCTTTCCTCTGCTTTAAACTTAGTGGAGGAAGCAAAGAAGGAGATAGATTCATACTCAAAGGCTGGGCCCATCTCATATGCAGATCTTATCCAATTCGCAGCACAATCTGCGTTGAAATCGACGTTCCTAGCTTCTGCCATTCGTAAATGTGGTGGGAATGAAGAAAAGGGGAACTTATTATATACTGCATATGGTTCTAATGGACAGTGGGGGTTGTTTGATAGGCAATTTGGGAGGTCAGATACCCAAGAGCCAGATCCAGCGGGGAGGGTTCCCCAGTGGGAGAAAGCAAGTGTTCAAGAAATGAAGGATAAGTTCTCAGCTATAGGGCTTGGACCCCGCCAGCTAGCTGTCATGTCTGCTTTTCTGGGCCCTGATCAAGCGGCAACAGAAGCTTTATTAGCAGCAGATAAGGATGTTTTTCCATGGGTTGAGAAGTATCAACGTAGCCGAGAAACAGTGTCCGAGACTGACTATCAGGTAGACTTGATTACAACTCTTACAAAAATAGCTAGCTTGGGCCAAGACATCAACTATGAAGCGTATACATATGCTCGCCCCAAAGTTGATCTTAGCAAACTCAAGTTGTAGAAAAAGGGCAAGGCAACTGCTTTCCGTTGAAAGCTCTAGAGTTTTCATAGACACGTTTGCGGCATTATGTTAGTATTAGCTGCGGAGATATGTTCCATTCTTATTTTTGGAAGATGAAGAGCTAAATTTTACACGTATGCATTTCCGGAGGGTTGACTATCGTA

Network for GWHGAAZE014297

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	96	270	3.70E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00434	E1.11.1.11	Metabolic pathways	map01100
		Ascorbate and aldarate metabolism	map00053
		Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	153.325
	SRR3591706	second leaf	387.374
	SRR3591707	mature leaf	105.929
	SRR3591708	Shoot apex	241.253
	SRR3591709	Stem	55.780
	SRR3591710	White floral bud	14.033
	SRR3591711	White flower	16.498
	SRR3591712	Green floral bud	32.065
	SRR3591713	Yellow flower	8.901
SRP173429	SRR8316895	Juvenile bud stage	54.517
	SRR8316896	Juvenile bud stage	49.282
	SRR8316897	Juvenile bud stage	37.575
	SRR8316894	Third green stage	17.035
	SRR8316900	Third green stage	42.541
	SRR8316901	Third green stage	36.776
	SRR8316898	Complete white stage	4.964
	SRR8316899	Complete white stage	26.092
	SRR8316903	Complete white stage	8.113
	SRR8316902	Silver flowering stage	4.449
	SRR8316904	Silver flowering stage	3.995
	SRR8316905	Silver flowering stage	3.130
	SRR8316906	Gold flowering stage	10.044
	SRR8316907	Gold flowering stage	12.349
	SRR8316908	Gold flowering stage	10.397
SRP132670	SRR6706286	Control	40.997
	SRR6706287	Light intensity 50%	37.059
	SRR6706288	Light intensity 20%	40.250
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.865
	CNS0095593	Slightly white alabastrum(diploid) 2	44.272
	CNS0095594	Slightly white alabastrum(diploid) 3	37.290
	CNS0095595	Whole white alabastrum(diploid) 2	31.391
	CNS0095596	Whole white alabastrum(diploid) 3	28.241
	CNS0095597	Whole white alabastrum(diploid) 4	22.556
	CNS0095598	Silvery flower (diploied) 1	55.098
	CNS0095599	Silvery flower (diploied) 2	57.892
	CNS0095600	Silvery flower (diploied) 3	14.171
	CNS0095601	Golden flower (diploid) 1	43.909
	CNS0095602	Golden flower (diploid) 2	21.975
	CNS0095603	Golden flower (diploid) 3	20.609
	CNS0095604	Slightly white alabastrum(tetraploid) 1	51.295
	CNS0095605	Slightly white alabastrum(tetraploid) 2	53.554
	CNS0095606	Slightly white alabastrum(tetraploid) 3	83.325
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.136
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.832
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.723
	CNS0095610	Silvery flower (tetraploid) 1	8.894
	CNS0095611	Silvery flower (tetraploid) 2	12.200
	CNS0095612	Silvery flower (tetraploid) 3	7.806
	CNS0095613	Golden flower (tetraploid) 1	5.578
	CNS0095614	Golden flower (tetraploid) 2	6.516
	CNS0095615	Golden flower (tetraploid) 3	1.671
CRA001975	CRR073297	Stem 1	61.757
	CRR073298	Stem 2	51.364
	CRR073299	Stem 3	55.556
	CRR073300	Leaf 1	25.285
	CRR073301	Leaf 2	28.569
	CRR073302	Leaf 3	31.643
	CRR073303	Juvenile bud 1	18.784
	CRR073304	Juvenile bud 2	11.225
	CRR073305	Juvenile bud 3	16.533
	CRR073306	Third green 1	4.489
	CRR073307	Third green 2	2.339
	CRR073308	Third green 3	3.483
	CRR073309	Second white 1	2.055
	CRR073310	Second white 2	1.346
	CRR073311	Second white 3	0.784
	CRR073312	Silver flowering 1	0.627
	CRR073313	Silver flowering 2	1.505
	CRR073314	Silver flowering 3	1.370
	CRR073315	Gold flowering 1	115.609
	CRR073316	Gold flowering 2	117.312
	CRR073317	Gold flowering 3	72.714
	CRR073318	Tawny withering 1	14.345
	CRR073319	Tawny withering 2	12.133
	CRR073320	Tawny withering 3	14.676