Gene detail

Detail information of GWHGAAZE014216

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002283600.3	PREDICTED: uncharacterized protein LOC100257433 [Vitis vinifera]
Swissprot	tr\|Q9LJM4\|IKU2_ARATH	Receptor-like protein kinase HAIKU2 (Precursor)
trEMBL	tr\|A0A061FM64\|A0A061FM64_THECC	Leucine-rich receptor-like protein kinase family protein, XI-23,RLK7 {ECO:0000313\|EMBL:EOY15589.1}
TAIR10	AT1G09970.1	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	8030006	8033037	-
GWHAAZE00000004	mRNA	8030006	8033037	-
GWHAAZE00000004	exon	8030006	8030394	-
GWHAAZE00000004	exon	8030472	8033037	-
GWHAAZE00000004	CDS	8030472	8033037	-
GWHAAZE00000004	CDS	8030006	8030394	-

Transcript Sequence
>GWHTAAZE014230 ATGTCGGCGGCCAAAACTTTCCGGCAAAACCTACATCTCCTCTATCCACTCTTTATTATCTCCCTTTTCTCCTTCGCTAATTCCGATGAGCTCCAAATACTCCTAAACCTCAAAACTGCCCTCCAAAAGTCCAACACAAACTTATTCGATTCTTGGGAATCCAATCACAACAATTCTGTATGTAATTTCGCAGGAATCACCTGCAATTCAAACGGCTCGGTCAAGGAAATCGAGCTCTCGCACCGAGGACTCACCGGCTCTATTCCCTTCGATTCCATATGCCAGCTCAATTCACTGGAAAAGCTTTCCCTCGGCAGCAACTCATTAAACGGTCGAGTTACAGAGGATTTAAGCAACTGCGTTCGATTGACTTACTTAGACCTTGGCAACAATATGTTCTCCGGTTCGACTCCAGATATTTCTCCGATCAACGGACTAATGTTTCTGTACATGAATACCAGTGGACTTTCCGGTACTTTTCCGTGGAATTCACTTAAAAACATGACGAATCTCGTTGCGTTGAGCCTTGGTGACAATAACTTTGATCTTACTCCTTTTCCAGAGGAATTGACAAAGCTTACGAAATTGAATTGGCTTTATTTGTCAAATTGTAGCATCGGAGGGAAAATTCCACCGGGAATTGGAAATCTGACGGAGCTGATTAATTTGGAGCTAGCGAGTAATTTCTTATCCGGAGAGATCCCTCCGGAGATTTCAAAGCTACAAAAGCTATGGCAGCTCGAGCTATTTGCTAACGATTTGACTGGAAAACTTCCTTTAGGTATTCGGAACCTAACGAGTCTAAAAAACTTTGATGCTTCGATGAATTTTATACAAGGTGATCTTACGGAGGTGAAGTTTTTGAATCAGCTAGTGAGTTTTCAAATGTTCCAGAACGAGTTGTCTGGCGAAATTCCGGTGGAGTTTGGGGAATTCAGGCAGCTGGAGGACTTTTCTCTTTACCGGAACAAGTTTACCGGTTCACTTCCGGTGAAGCTGGGTTCGTGGTCCAATTTCAACTTCATAGACATTTCTGAGAATTTTCTCACAGGTCCAATACCTCCGGAAATGTGCAAGCAGGGGAAGATGACCGAGATTTTGATGCTGCAGAACCAATTCACCGGCGAAATTCCGGCCAGTTACGCGAGTTGTAAGACGTTGACGCGTATTCGACTCAGTAACAACTCGCTTTCCGGTGTAGTACCTAGTGGAATTTGGGGTTTGCCTAACGTTAATTTCCTTGATATAGCAATGAATGAACTGGAAGGTCCAATTACATCCAATATCGGTGAATCGAAGTTGTTGGCACAGTTGATTGTATCCAATAACCGATTATCCGGTGAATTGCCAGAGGTTACTTCGAAGACTTCACAATTGGTTACAATTGATTTAAGTTACAATCAATTCTCCGGTAAAATACCGTCCACAATTGGAGAACTAAAACAACTCTACAGCCTGCATTTAGAGCACAACACTTTCTCTGGTGTAATACCGGACTCGTTAAGCCTTTGTCATTCTCTCAGCGACGTAAACATGGCACACAATTCTCTCTCCGGCCAAATTCCAGCGTCTCTTGGGTCATTACCAAATCTCAACTCGTTGAATTGCTCGGCAAATCAACTCTCCGGCAAGATTCCGGTGAGTCTGTCATATTTAAGGCTAAGCCTTCTTGACATGTCCAACAACCGGTTGACCGGGCCAATACCAGAGTCTCTTTCGATAGAGGCCTACAATGGCAGCTTTGCCGGCAATGGTGGTCTTTGCAGTCAGAAAATCAAGTACTTTCGCCGGTGTTCATCGGATACCGGCATGTCCAAAGACTTTCGGACCCTTATTGCTTGCTTCAGTGTGGGGTCATTTGCCATTTTTGTCTCACTTGCATGTTTCTTTTACTTGAAGAGGAGTCAAAAGGATCATGACCGTTCATTGAAGGAAGATTCATGGGATGTAAAGTCCTTCCATGTATTGAGCTTCACGGAAGATGACATTCTTGATTCAATCAAGCAAGAGAATGTGATCGGAAAAGGTGGTTCCGGAAGTGTCTACAAAGTTTCGCTGGAAAATGGCCTCGATTTGGCCGTTAAACACATCTGGAACTCAGATTCTAGTGGCCGGAAAAAGTCCCGGAGCAGCTCTCCGATGCTGACAAAATCGGAAAAGTCGCCGGAATTTGATGCAGAGGTACAAACATTAAGCTCGATCAGACACGTTAATGTGGTGAAACTGTACTGCAGTATTACCAGCGAGGATTCGAGTTTGTTGGTGTATGAATATTTGCCAAATGGGAGCTTGTGGGATAGATTGCACACTTGTAGAAAAATGGCCCTTGATTGGGAAACGAGATATGAGATAGCCGTGGGTTCAGCAAAAGGGCTAGAGTATCTTCATCACGGTGTTGAAAGGCCGGTAATTCACCGAGATGTAAAATCTAGCAACATTTTGTTGGACGAGTATTTGAAGCCAAGGATAGCTGATTTTGGACTAGCAAAGATTGTTCAAGCTAATACAACAGCAAGCAAGGATTCAACTCATGTAATTGCAGGAACACATGGCTACATCGCTCCAGAATATGGGTACACATACAAAGTAAACGAGAAGAGTGACGTGTATAGTTTCGGCGTGGTTTTGATGGAGCTTGTGGCCGGAAAGAGGCCAATTGAGCCCGAGTACGGAGATAACAAGGACATAGTGAATTGGGTATGTAGCAAGTTGAAGAATAGAGATACTGTGTTGAGCGTGGTGGACTCAAGGATAGCTGAGTGTTACAAGGAAGACGCCATTAAAGTTCTGAAGATTGCGATTTTGTGCACAGCGACGCTTCCAGCCCTAAGGCCTACTATGAGAAATGTGGTTCAAATGCTAGAAGATGCTGATCCTTGTAAACTAGTAGGGATCATTGTAAGTAAAGAGGGTGGTAGTAAGAAGGAAATGTTGAGGGATAATGATAAAGTTTGA

Network for GWHGAAZE014216

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	28	69	5.60E-07
PF00560.34	LRR_1	195	217	1.6
PF00069.26	Pkinase	669	952	3.60E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.203
	SRR3591706	second leaf	15.959
	SRR3591707	mature leaf	46.679
	SRR3591708	Shoot apex	7.569
	SRR3591709	Stem	55.440
	SRR3591710	White floral bud	19.152
	SRR3591711	White flower	36.069
	SRR3591712	Green floral bud	6.083
	SRR3591713	Yellow flower	24.094
SRP173429	SRR8316895	Juvenile bud stage	9.335
	SRR8316896	Juvenile bud stage	11.905
	SRR8316897	Juvenile bud stage	6.622
	SRR8316894	Third green stage	3.417
	SRR8316900	Third green stage	5.085
	SRR8316901	Third green stage	6.758
	SRR8316898	Complete white stage	4.814
	SRR8316899	Complete white stage	22.315
	SRR8316903	Complete white stage	10.244
	SRR8316902	Silver flowering stage	16.652
	SRR8316904	Silver flowering stage	20.655
	SRR8316905	Silver flowering stage	11.250
	SRR8316906	Gold flowering stage	46.756
	SRR8316907	Gold flowering stage	42.043
	SRR8316908	Gold flowering stage	45.763
SRP132670	SRR6706286	Control	10.699
	SRR6706287	Light intensity 50%	9.278
	SRR6706288	Light intensity 20%	8.465
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.304
	CNS0095593	Slightly white alabastrum(diploid) 2	9.688
	CNS0095594	Slightly white alabastrum(diploid) 3	12.695
	CNS0095595	Whole white alabastrum(diploid) 2	11.269
	CNS0095596	Whole white alabastrum(diploid) 3	1.932
	CNS0095597	Whole white alabastrum(diploid) 4	10.103
	CNS0095598	Silvery flower (diploied) 1	41.529
	CNS0095599	Silvery flower (diploied) 2	39.005
	CNS0095600	Silvery flower (diploied) 3	39.218
	CNS0095601	Golden flower (diploid) 1	49.775
	CNS0095602	Golden flower (diploid) 2	68.357
	CNS0095603	Golden flower (diploid) 3	65.802
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.638
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.192
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.336
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.415
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.245
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.986
	CNS0095610	Silvery flower (tetraploid) 1	29.282
	CNS0095611	Silvery flower (tetraploid) 2	27.922
	CNS0095612	Silvery flower (tetraploid) 3	13.566
	CNS0095613	Golden flower (tetraploid) 1	14.635
	CNS0095614	Golden flower (tetraploid) 2	27.295
	CNS0095615	Golden flower (tetraploid) 3	41.711
CRA001975	CRR073297	Stem 1	17.116
	CRR073298	Stem 2	15.749
	CRR073299	Stem 3	16.344
	CRR073300	Leaf 1	9.919
	CRR073301	Leaf 2	12.360
	CRR073302	Leaf 3	9.326
	CRR073303	Juvenile bud 1	8.157
	CRR073304	Juvenile bud 2	13.701
	CRR073305	Juvenile bud 3	19.024
	CRR073306	Third green 1	24.175
	CRR073307	Third green 2	16.930
	CRR073308	Third green 3	24.822
	CRR073309	Second white 1	16.641
	CRR073310	Second white 2	17.835
	CRR073311	Second white 3	21.917
	CRR073312	Silver flowering 1	16.333
	CRR073313	Silver flowering 2	18.138
	CRR073314	Silver flowering 3	18.347
	CRR073315	Gold flowering 1	24.755
	CRR073316	Gold flowering 2	55.724
	CRR073317	Gold flowering 3	42.544
	CRR073318	Tawny withering 1	48.214
	CRR073319	Tawny withering 2	44.729
	CRR073320	Tawny withering 3	35.923