Gene detail

Detail information of GWHGAAZE014215

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002301126.1	hypothetical protein POPTR_0002s11230g [Populus trichocarpa]
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|B9GNA0\|B9GNA0_POPTR	Uncharacterized protein {ECO:0000313\|EMBL:EEE80399.1}
TAIR10	AT5G49660.1	Leucine-rich repeat transmembrane protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	8017909	8021167	-
GWHAAZE00000004	mRNA	8017909	8021167	-
GWHAAZE00000004	exon	8017909	8018300	-
GWHAAZE00000004	exon	8018788	8021167	-
GWHAAZE00000004	CDS	8018788	8021167	-
GWHAAZE00000004	CDS	8017909	8018300	-

Transcript Sequence
>GWHTAAZE014229 ATGAAGAAGTCTCTATCAGGGAAGAACTTGTTTGACTGGGATATCGGTGGAAGGAAGCCCTTCTGCAACTTCACAGGTTTCGGGTGTAATGATCAAGGGTCTGTTGTACAGATTGATGTCTCCGGTTGGTCACTATCAGGCCAATTTCCTGAAGATGTATGCTCTTACTTCCCTCAGTTACGTATTCTTCGTCTAGGCCACAACAACTTCCATAGCAAGTTTCCTAACAGCATCACCAACTGCTCTCTCCTAGAAGAGTTGAATATGACCTCAGCATATCTCACAGGGACCCTACCAGACTTCTCACCGATGTTATCTCTGAGGTTGATTGATCTTTCATACAACCTCTTCACGGGTGAATTCCCCGTCTCAGTAACCAATCTCACAAATCTGGAGGTGCTCAACTTCAATGAGAATGGCGGTTTCAACCTATGGCAACTGCCTGAGAATTTTTCCAGGCTGACAAAGCTCAAGACGGTGGTGTTAACAACATGCATGGTGAAGGGTCGAATTCCATCATTGATAGGAAACATGAGCTCGCTAGTTGATCTTGAATTGAGTGGGAATTTCCTTGTGGGTCAGATTCCAGCAGAGCTTGGTTTGCTTAAAAACTTGGTACAGCTTGAGCTCTACTACAACCAGCTTTCTGGCTATATACCGGAGGAGCTCGGAAATCTGACCAAGCTTCGGGATTTGGACATGTCGGTCAACAAGTTGACCGGAGAACTACCTGACTCTATATGTCAACTTCCAAACCTTGAAGTCCTGCAGCTCTACAACAACAGTCTCACAGGTGAAATCCCGGGTGTGATTGCAAATTCAACAACCTTGACCATGTTATCCCTTTACGACAATTTTTTGACAGGGGAGGTCCCGACAAATCTAGGCGGGTCATCACCTATGATTGTCTTGGACTTGTCAGAAAATCGTTTATCTGGGCAACTGCCTGCAGAGGTGTGCAGTGGAGGTAAATTGTCCTACTTTCTTGTCCTAGAAAACATGTTTTCTGGAGAACTGCCAGGAAGCTATGCAAAATGCGAATCCCTTTTACGCTTTCGAGTTAGTTATAACCAATTGGAGGGCTCAATACCTGAAGGGCTTCTAGGTCTTCCCCACGTTTCGATAATTGATTTGGGTTACAACCTTTTGAATGGTTCGATACCCAAAACATTTGGAAATGCCAAAAACTTGTCGGAGTTGTTCATACAAAGCAACAGGATATTAGGTATTCTACCCCCCGAAATATCTCAAGCTATCAACCTAGTAAAGCTTGATCTCAGCAATAATCTCTTGTATGGGCCAATACCTTCTGAAATTGGCAGCCTTAAAAAGCTCAATCTTTTACAGCTGCAAGGTAACAACTTCCATTCTTCCATCCCTCAATCGTTCTCTTTCTTAAAATCACTCAATGTTCTTGATCTGTCCAGCAATCGGTTAATGGGCAAAATCCCGGAAAGCCTTTGTGAGTTGCTACCAAACTCTATGAACTTTACAAATAATATGCTTTCTGGTCCCATCCCTCGAGCATTTATAGAGGGAGGATTGTTAGAGAGCTTTTCGGGCAATCCAAGTCTTTGTGTTCCTTCCAATCTCAATTCCTCCGTTCAAAATTTCCCCCTATGTTCGCAGACTTATAATCGAAAGAAAATTAACTGTATATGGGTGATTGGGATTTCAGTTGGGCTAGTAATCGTTGGGCTTGCCTTGTTTCTTAAGCGCTGGTTTAGTAAAGAAAGAGATGTCATAGAACATGAGGAGACCATGTCTTCCTCATTGTTCTCCTATGATGTAAAAAGTTTCCATAGGATAAGCTTTAATCAGCGTGAGATCATTGAAGCCATGGTTGATAAGAACGTAGTGGGGCATGGAGGATCAGGAACTGTGTATAAAATTGAGTTGAGCAATGGGGAAGTTGTTGCTGTGAAGAGGCTCTGGAGTCGAAAAACAAAAGAATCTGCTTCAGAGGATCATATCAACGTGGACAAGGAACTAAAAACTGAAGTTGAGACTTTAGGAAGCATTAGGCATAAAAATATCGTGAAGTTGTACTGCTACTTCTCGAGTTTGGATTGCAACTTATTGGTTTATGAGTACATGCCAAATGGAAACCTTTGGGATGCACTTCATAGAGGAAAATCTCCTTTAGATTGGCCAACACGTCATCAAATTGCACTGGGGGTAGCACAGGGTTTGGCCTATCTCCATCACGATCTATTGCCACCAATTATTCACAGAGACATCAAGACAACCAACATCTTACTTGATGTCAATTACAAACCAAAAGTGGCAGATTTTGGCATAGCCAAAGTTTTGCGGGCCAGAGGAGGGAAAGATTCCACAACTACTGTTATTGCAGGGACTTATGGTTACTTGGCGCCAGAATATGCATATTCTTCCAAGGCAACAACCAAGTGTGATGTCTACAGCTTCGGAGTGGTACTAATGGAACTATTAACTGGGAAGAAGCCCGTGGAGGTGGAGTTTGGAGAGAACAAGAACATCATAAATTGGGTTTCAATTAAAGTGAACAAAGAAGGAGCTTTTGAGGTTTTAGATAAACGATTATCAGGATCATTCAAGGATGAGATGATTAAGGTGCTCCGAATTGCCATGCGTTGTACATGTGGGGCCGCAACCAGTCGTCCAACTATGAATGAGGTTGTACAGTTGCTCAATGAGGCGGACCCATGCAGATTCGATTCGAGCAAGTTAGCAAATAAAACCAAAGAAACAGATAATGTCATTAAGCCAAAGAACCCATATGAATTATGA

Network for GWHGAAZE014215

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	420	479	6.20E-07
PF00069.26	Pkinase	616	889	1.00E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.298
	SRR3591706	second leaf	2.528
	SRR3591707	mature leaf	12.710
	SRR3591708	Shoot apex	1.297
	SRR3591709	Stem	9.392
	SRR3591710	White floral bud	7.693
	SRR3591711	White flower	4.937
	SRR3591712	Green floral bud	2.650
	SRR3591713	Yellow flower	2.508
SRP173429	SRR8316895	Juvenile bud stage	0.870
	SRR8316896	Juvenile bud stage	0.684
	SRR8316897	Juvenile bud stage	0.460
	SRR8316894	Third green stage	1.037
	SRR8316900	Third green stage	2.296
	SRR8316901	Third green stage	1.659
	SRR8316898	Complete white stage	1.894
	SRR8316899	Complete white stage	6.123
	SRR8316903	Complete white stage	5.119
	SRR8316902	Silver flowering stage	1.450
	SRR8316904	Silver flowering stage	2.735
	SRR8316905	Silver flowering stage	0.932
	SRR8316906	Gold flowering stage	1.028
	SRR8316907	Gold flowering stage	1.529
	SRR8316908	Gold flowering stage	1.874
SRP132670	SRR6706286	Control	1.065
	SRR6706287	Light intensity 50%	0.919
	SRR6706288	Light intensity 20%	0.999
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.891
	CNS0095593	Slightly white alabastrum(diploid) 2	2.166
	CNS0095594	Slightly white alabastrum(diploid) 3	1.273
	CNS0095595	Whole white alabastrum(diploid) 2	2.749
	CNS0095596	Whole white alabastrum(diploid) 3	1.267
	CNS0095597	Whole white alabastrum(diploid) 4	1.879
	CNS0095598	Silvery flower (diploied) 1	6.696
	CNS0095599	Silvery flower (diploied) 2	3.338
	CNS0095600	Silvery flower (diploied) 3	3.521
	CNS0095601	Golden flower (diploid) 1	2.664
	CNS0095602	Golden flower (diploid) 2	3.562
	CNS0095603	Golden flower (diploid) 3	3.043
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.952
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.760
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.891
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.245
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.254
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.382
	CNS0095610	Silvery flower (tetraploid) 1	2.691
	CNS0095611	Silvery flower (tetraploid) 2	4.249
	CNS0095612	Silvery flower (tetraploid) 3	1.107
	CNS0095613	Golden flower (tetraploid) 1	2.464
	CNS0095614	Golden flower (tetraploid) 2	2.733
	CNS0095615	Golden flower (tetraploid) 3	18.719
CRA001975	CRR073297	Stem 1	1.030
	CRR073298	Stem 2	0.940
	CRR073299	Stem 3	0.791
	CRR073300	Leaf 1	1.996
	CRR073301	Leaf 2	1.830
	CRR073302	Leaf 3	1.828
	CRR073303	Juvenile bud 1	3.694
	CRR073304	Juvenile bud 2	1.234
	CRR073305	Juvenile bud 3	4.430
	CRR073306	Third green 1	1.340
	CRR073307	Third green 2	1.080
	CRR073308	Third green 3	1.414
	CRR073309	Second white 1	0.543
	CRR073310	Second white 2	0.456
	CRR073311	Second white 3	0.272
	CRR073312	Silver flowering 1	0.152
	CRR073313	Silver flowering 2	0.089
	CRR073314	Silver flowering 3	0.285
	CRR073315	Gold flowering 1	6.433
	CRR073316	Gold flowering 2	8.110
	CRR073317	Gold flowering 3	5.695
	CRR073318	Tawny withering 1	18.971
	CRR073319	Tawny withering 2	34.228
	CRR073320	Tawny withering 3	15.620