Detail information of GWHGAAZE014099


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002510218.13.77307E-17alpha-amylase, putative [Ricinus communis]
Swissprottr|P04063|AMY2_HORVU3E-16Alpha-amylase type B isozyme (Precursor)
trEMBLtr|B9R7C5|B9R7C5_RICCO1E-17Alpha-amylase {ECO:0000256|RuleBase:RU361134}
TAIR10AT4G25000.11E-13alpha-amylase-like

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene55521825552646-
GWHAAZE00000004mRNA55521825552646-
GWHAAZE00000004exon55521825552388-
GWHAAZE00000004exon55526115552646-
GWHAAZE00000004CDS55526115552646-
GWHAAZE00000004CDS55521825552388-
Transcript Sequence

Network for GWHGAAZE014099

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01176AMY, amyA, malS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500
Pancreatic secretionmap04972
Carbohydrate digestion and absorptionmap04973

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.673
SRR3591706second leaf1.122
SRR3591707mature leaf0.921
SRR3591708Shoot apex0.200
SRR3591709Stem3.960
SRR3591710White floral bud11.553
SRR3591711White flower7.471
SRR3591712Green floral bud3.244
SRR3591713Yellow flower11.502
SRP173429 SRR8316895Juvenile bud stage 1.095
SRR8316896Juvenile bud stage 2.872
SRR8316897Juvenile bud stage 1.366
SRR8316894Third green stage 0.569
SRR8316900Third green stage 1.756
SRR8316901Third green stage 2.416
SRR8316898Complete white stage 2.163
SRR8316899Complete white stage 9.295
SRR8316903Complete white stage 3.680
SRR8316902Silver flowering stage6.169
SRR8316904Silver flowering stage10.242
SRR8316905Silver flowering stage4.490
SRR8316906Gold flowering stage 13.025
SRR8316907Gold flowering stage 7.601
SRR8316908Gold flowering stage 12.074
SRP132670SRR6706286Control6.276
SRR6706287Light intensity 50%8.457
SRR6706288Light intensity 20%9.339
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.609
CNS0095593Slightly white alabastrum(diploid) 20.808
CNS0095594Slightly white alabastrum(diploid) 30.918
CNS0095595Whole white alabastrum(diploid) 21.326
CNS0095596Whole white alabastrum(diploid) 31.773
CNS0095597Whole white alabastrum(diploid) 43.088
CNS0095598Silvery flower (diploied) 12.248
CNS0095599Silvery flower (diploied) 23.362
CNS0095600Silvery flower (diploied) 38.100
CNS0095601Golden flower (diploid) 12.314
CNS0095602Golden flower (diploid) 24.313
CNS0095603Golden flower (diploid) 38.592
CNS0095604Slightly white alabastrum(tetraploid) 12.887
CNS0095605Slightly white alabastrum(tetraploid) 21.395
CNS0095606Slightly white alabastrum(tetraploid) 32.098
CNS0095607Whole white alabastrum(tetraploid) 11.844
CNS0095608Whole white alabastrum(tetraploid) 22.224
CNS0095609Whole white alabastrum(tetraploid) 36.971
CNS0095610Silvery flower (tetraploid) 127.899
CNS0095611Silvery flower (tetraploid) 225.626
CNS0095612Silvery flower (tetraploid) 321.016
CNS0095613Golden flower (tetraploid) 110.596
CNS0095614Golden flower (tetraploid) 214.647
CNS0095615Golden flower (tetraploid) 322.765
CRA001975CRR073297Stem 12.732
CRR073298Stem 21.727
CRR073299Stem 31.821
CRR073300Leaf 10.899
CRR073301Leaf 21.628
CRR073302Leaf 32.045
CRR073303Juvenile bud 11.973
CRR073304Juvenile bud 22.867
CRR073305Juvenile bud 31.284
CRR073306Third green 126.505
CRR073307Third green 29.431
CRR073308Third green 315.498
CRR073309Second white 111.022
CRR073310Second white 25.938
CRR073311Second white 37.124
CRR073312Silver flowering 110.037
CRR073313Silver flowering 27.764
CRR073314Silver flowering 36.613
CRR073315Gold flowering 11.139
CRR073316Gold flowering 20.962
CRR073317Gold flowering 31.045
CRR073318Tawny withering 10.510
CRR073319Tawny withering 22.535
CRR073320Tawny withering 31.046