Gene detail

Detail information of GWHGAAZE014098

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFO84070.1	0	alpha-amylase [Actinidia chinensis]
Swissprot	tr\|P17859\|AMYA_VIGMU	0	Alpha-amylase (Precursor)
trEMBL	tr\|S4SLG7\|S4SLG7_ACTCH	0	Alpha-amylase {ECO:0000256\|RuleBase:RU361134}
TAIR10	AT4G25000.1	1E-140	alpha-amylase-like

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	5550544	5551735	-
GWHAAZE00000004	mRNA	5550544	5551735	-
GWHAAZE00000004	exon	5550544	5550795	-
GWHAAZE00000004	exon	5550893	5551735	-
GWHAAZE00000004	CDS	5550893	5551735	-
GWHAAZE00000004	CDS	5550544	5550795	-

Transcript Sequence
>GWHTAAZE014112 ATGCTTCAGCTTCTCTTCTTTTCCCCTCCTTTTGCAGGATATATGCCGGGAAGGTTATATGATCTCAATGCATCACAATATGGGAATGAAGCTGAATTAAAAGCTTTAATTAACGCCTTCCACAATAAAGGTATAAAATGCATAGCTGACATAGTAATAAACCACAGAACTGCAGAGAAGCAAGATAGCAGAGGGATATGGTCCATATTTGAAGGAGGAACAGCTGATGACCGTCTCGACTGGGGACCATCATTCATTTGCAAAGATGATACACAGTACTCCAATGGCCAAGGAAACCCCGATACCGGAGATGACTTTGAACCTGCTCCCGATATTGACCATCTTAACCCTAGAGTACAAAGAGAGTTATCCGATTGGATGAATTGGCTAAAGACTGAAATTGGATTTGATGGGTGGCGATTTGACTTTGTTAGAGGCTACTCTCCTAATATCACTAAGGTATATATGGACAACACGTCCCCGGATTTTGCAGTCGGGGAATTGTGGAATTCACTTTCGTATGAGCAAGATGGAAAACCGGCATATAACCAAGACCAACATCGTAATGAGTTGGTTCAGTGGGTCCAAAATGGTGGTGGGGTTGTGACCGCGTTTGATTTCACAACAAAGGGAATTCTTCAGGCTGCAGTGGAGCGAGAATTGTGGAGAATGAAGGATACGAATGGAAATCCTCCAGGGATGATTGGGGTTTTACCAGGAAATGCTGTGACCTTTATTGAAAATCATGATACCGGTTCAACACAGAATCATTGGCCATTTCCATCAGATAAAGTCATTCAAGGATATGCCTATATTCTCACTCATCCGGGGGTACCATCACTGTTTTATGATCACTTCTTTGATTGGGGACTGAAGGATGAAATTGTCATATTGTCTAAAATTAGGACAAGGAATGGGATTAGTGCAACAAGCAACGTGCAAATCATGGCAGCTGATTCAGACATGTATGTCGCAATGATCGATGACAAAGTTATTGTAAAGATTGGGCCAGAGTATGATGTTGGAAATCTTATTCCACCAAATTTTCAAATTGCTTCCTCTGGGAAAGACTATTGTGTGTGGGAAAAAAAGTGA

Network for GWHGAAZE014098

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00128.25	Alpha-amylase	25	197	1.60E-13
PF07821.13	Alpha-amyl_C2	304	362	2.90E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01176	AMY, amyA, malS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Pancreatic secretion	map04972
		Carbohydrate digestion and absorption	map04973

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0043169	molecular_function	cation binding
GO:0004556	molecular_function	alpha-amylase activity
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.633
	SRR3591706	second leaf	2.354
	SRR3591707	mature leaf	2.359
	SRR3591708	Shoot apex	1.649
	SRR3591709	Stem	9.398
	SRR3591710	White floral bud	15.025
	SRR3591711	White flower	18.747
	SRR3591712	Green floral bud	5.168
	SRR3591713	Yellow flower	24.992
SRP173429	SRR8316895	Juvenile bud stage	3.099
	SRR8316896	Juvenile bud stage	5.098
	SRR8316897	Juvenile bud stage	3.467
	SRR8316894	Third green stage	1.186
	SRR8316900	Third green stage	5.776
	SRR8316901	Third green stage	5.300
	SRR8316898	Complete white stage	5.812
	SRR8316899	Complete white stage	14.543
	SRR8316903	Complete white stage	6.068
	SRR8316902	Silver flowering stage	13.399
	SRR8316904	Silver flowering stage	17.213
	SRR8316905	Silver flowering stage	9.356
	SRR8316906	Gold flowering stage	27.056
	SRR8316907	Gold flowering stage	25.240
	SRR8316908	Gold flowering stage	31.741
SRP132670	SRR6706286	Control	8.172
	SRR6706287	Light intensity 50%	8.518
	SRR6706288	Light intensity 20%	7.908
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.196
	CNS0095593	Slightly white alabastrum(diploid) 2	3.529
	CNS0095594	Slightly white alabastrum(diploid) 3	5.158
	CNS0095595	Whole white alabastrum(diploid) 2	5.380
	CNS0095596	Whole white alabastrum(diploid) 3	4.205
	CNS0095597	Whole white alabastrum(diploid) 4	4.835
	CNS0095598	Silvery flower (diploied) 1	8.409
	CNS0095599	Silvery flower (diploied) 2	7.092
	CNS0095600	Silvery flower (diploied) 3	18.994
	CNS0095601	Golden flower (diploid) 1	5.669
	CNS0095602	Golden flower (diploid) 2	10.622
	CNS0095603	Golden flower (diploid) 3	12.445
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.971
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.272
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.037
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.371
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.698
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.975
	CNS0095610	Silvery flower (tetraploid) 1	42.470
	CNS0095611	Silvery flower (tetraploid) 2	50.793
	CNS0095612	Silvery flower (tetraploid) 3	44.670
	CNS0095613	Golden flower (tetraploid) 1	29.304
	CNS0095614	Golden flower (tetraploid) 2	28.954
	CNS0095615	Golden flower (tetraploid) 3	38.175
CRA001975	CRR073297	Stem 1	3.875
	CRR073298	Stem 2	2.382
	CRR073299	Stem 3	3.480
	CRR073300	Leaf 1	4.520
	CRR073301	Leaf 2	3.903
	CRR073302	Leaf 3	5.392
	CRR073303	Juvenile bud 1	6.103
	CRR073304	Juvenile bud 2	7.807
	CRR073305	Juvenile bud 3	9.491
	CRR073306	Third green 1	54.530
	CRR073307	Third green 2	29.066
	CRR073308	Third green 3	38.433
	CRR073309	Second white 1	20.917
	CRR073310	Second white 2	19.135
	CRR073311	Second white 3	15.251
	CRR073312	Silver flowering 1	22.735
	CRR073313	Silver flowering 2	19.784
	CRR073314	Silver flowering 3	17.920
	CRR073315	Gold flowering 1	1.177
	CRR073316	Gold flowering 2	4.613
	CRR073317	Gold flowering 3	2.133
	CRR073318	Tawny withering 1	3.512
	CRR073319	Tawny withering 2	6.022
	CRR073320	Tawny withering 3	2.015