Gene detail

Detail information of GWHGAAZE014094

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008220342.1	0	PREDICTED: phosphatidate phosphatase PAH2 [Prunus mume]
Swissprot	tr\|Q9FMN2\|PAH2_ARATH	3E-148	Phosphatidate phosphatase PAH2
trEMBL	tr\|M5XMH1\|M5XMH1_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ26696.1}
TAIR10	AT5G42870.1	1E-128	phosphatidic acid phosphohydrolase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	5465498	5472698	+
GWHAAZE00000004	mRNA	5465498	5472698	+
GWHAAZE00000004	exon	5465498	5466274	+
GWHAAZE00000004	exon	5466372	5467401	+
GWHAAZE00000004	exon	5467507	5467808	+
GWHAAZE00000004	exon	5467892	5467965	+
GWHAAZE00000004	exon	5468357	5468441	+
GWHAAZE00000004	exon	5468711	5468797	+
GWHAAZE00000004	exon	5468935	5469007	+
GWHAAZE00000004	exon	5470258	5470301	+
GWHAAZE00000004	exon	5470559	5470687	+
GWHAAZE00000004	exon	5470780	5470878	+
GWHAAZE00000004	exon	5471423	5471546	+
GWHAAZE00000004	exon	5472137	5472698	+
GWHAAZE00000004	CDS	5465498	5466274	+
GWHAAZE00000004	CDS	5466372	5467401	+
GWHAAZE00000004	CDS	5467507	5467808	+
GWHAAZE00000004	CDS	5467892	5467965	+
GWHAAZE00000004	CDS	5468357	5468441	+
GWHAAZE00000004	CDS	5468711	5468797	+
GWHAAZE00000004	CDS	5468935	5469007	+
GWHAAZE00000004	CDS	5470258	5470301	+
GWHAAZE00000004	CDS	5470559	5470687	+
GWHAAZE00000004	CDS	5470780	5470878	+
GWHAAZE00000004	CDS	5471423	5471479	+
GWHAAZE00000004	three_prime_UTR	5471480	5471546	+
GWHAAZE00000004	three_prime_UTR	5472137	5472698	+

Transcript Sequence
>GWHTAAZE014108 ATGTTTGCCGTGGAGAGGCTGGGCAGTTACATCACCCGTGGAGTTAACACCGTCTCTGGCCCTTTCCATCCATTCGGTGGTGCTGTCGATATCGTTGTGGTTGAGCAGCAAGATGGCACTTTTAAATCCTCCCCTTGGTACGTCCGGTTCGGAAAGTTCCAAGGGGTTTTGAAAGCAAAGGAGAAGGTTGTTAGCATAAGTGTTGATGGTGTTGAAGCAGATTTCCATATGTATTTGGATCATAGAGGAGTAGCATACTTTCTCAGAGAGGTGGATGCTGATGAAGTTGATTCTTCTTTATTGTGGCCTTCATCTTCGGGTGAGGAGGCCGATGGCCAATACCGTGATAGGAGGACAGTTAAGTCCAAAAGCTGCAATTATGATGCTGGACAATCAAATTTAGTTACTAAGATTGATGTGAGCAATGGTAAAGTTGTGGCTAGAACAAATTCTCGCCGGTCTAAAATATTGGGGCTTGTTTTTGGAAGGAAGTCAATGAAGGAGGGTAGTAGAGTTGGAGATGAAGATGGTGCTGGTGTTGTGAGGACCGATTCGTTGGACCGTGCTGAGATTGCTGCTGATCTTTTGGATGTTAGGTGGTCTACTAATCTTGCCTGTGGCCAGCTCGGGAAAGATGATGCACCGCGATTTTTTAATTCGAATATTTCACAGTGTGTAGCAAATAAGGATTGGGAGATTAGTAATAATAGCACAAATAGTTTGGACAATCTCTCGTGGTCTAGCTTTCAGAAATTGGAGAGGCCGTTGAGGAAACCGAATAGTGTAGCAAATGTTGATCCTGCTGAAAATTCAAAAAATTTCGAATCTGAGATTTTTCTTGATCACGAACATGCTTATGAAGAGGACAATGGGGTTTTATTAAAAGCTGGTGTTCTTGAGGGGAATGGATCAGAGAGGGTCGAAGCCATTATTTACTGTGATACGTCTGAGAGATCAAGAATTGTGTCAGATGTTCTTGGTGAACAAGCCGATGAAACTCTGTACCTTTCTTGTGGAAAATGTGGGGATATCAAATTGTGCGCTGAAACTTTACATGAGAGAACTGAGCTAATATCTGAAAGTGAAGGAAATTCTTCAGCGGCAAGTAGTATCGAAACAGAAACCTATTCTGAACTAGTCACCGTTGCTCCATTAAATGGTTCTGCAAAAGTCACCATTTCTAGTATCAGAAACTCAACTTGTGTAGGTCAAGATGAGAAAATTCCTTGTGAAGAAGATGAAGTGAACAAGCTCGGTCCTTCTTTTGAGCCTGTTTGTGATTCTCAAGAAATTAATTGTGATTTTGTCCCTAGCAAGGTATCAAATGTTCCTGAGGAAGAACAATTCCAATTCAGCGACGGTGATGATTTCAAATTCAGAGAGGACGGTGATGATTTCAAAGTCAGAGAGGTCAAATGCACGGAGTCGATTTCTCTAGATCACGTGGAGGATGAAAATCCGCTAACTGATGTAGAGTTAAGACAAGAGCCAAAAACAACGTCTAGTAATGTTAATATTCCCAGAAGAGGTGAAGTTGCAACTGAGGAAGTTGGGTGGATGGTCAAATCTTTACCCAATAAGCAGTCTCGGTTCGATGAATTGGATGGACATCGTCTGCATCCTCTTTTAGCTCATTCTCTGGATTCAAATTCCAAATCTTCAAAGTGGATGGTTATTAGGAAAGATCTTTCAAATTGTGTAAAGTTAGCTAGAGATGAAGAACACAAGTTATTCAATTCAAAGCCTACAACTGAGGATGCTCTGATTCCAGAGGAGCTCAAAAATGCACCTGCTACCCCTGAAACTGGGGACCCGTCTGAAATTATTGATTCCTCCAGTGGAAGCTGGGGTCTTTGGCCTTTCAGAAGATCAAGAAGCTTTAAAAGTTCTCTGTCAGCTGGGATTCCTACAAGAGATTTAAATGCTGAGAATGCTTTTGAGAGCAATAGTACCATGGATGTGGAAAATGATGTGCATAATCCCGTGGTGAATAAAAAGAAAATAAGGGCAACCACTCCAACATCCGAACAATTGGCATCCTTGAACCTGAAGGAAGGAAGGAATGTAGTGACCTTTACGTTCTCAACTGCAATGCTGGGGGAGCAGCAGGTTGATGCCCGAATTTATTTGTGGAGATGGGACACTCGTATTGTGATCTCAGATGTTGATGGGACAATTACCAAATCGGATCTTCTAGGGCAGTTTATGCCTTTGGTTGGAAAAGATTGGTCACAGACAGGTGTTGCACATCTTTTCTCAGCTATTAAGGAAAATGGGTATCAAATGCTTTTCTTAAGTGCTAGGGCTATTTCTCAGGCCTATCATACTAGACAGTTCCTATTCAACCTCAAGCAGGATGGAAAGGCTTTGCCTGATGGGCCTGTTGTTATTTCCCCTGATGGACTATTTCCTTCTCTTTTTCGAGAAGTTATTAGAAGGGCACCTCATGAATTCAAAATTGCTTGCTTGGAGGATATAAAGGCGTTATTTCCTGCTGATAGAAACCCATTTTATGCTGGTTTTGGAAACAGACACACGGACGAATTTAGCTACCTTAAGGTTGGAATCCCCAAAGGAAAAATCTTCATTATTAATCCCAAGGGTGAGGTAGTTGTGAACCGGCGGGTTGACTCAAAATCATATACATCCCTTCAAGCTCTTGTGAATGACATGTTTCCGCCCATGACCTCGTCTGAGCCGGAAGACTTTAACTCCTGGAATTATTGGAAACTTCCACCTCCTGATATAAGTTGTTGAGTATATATTACTTGATCCTTTGTATTGGAGATACACAGAAGAAACTGCTTCTCGTAGAATTATTCAGGGAAGGCATTGGTTGATGGCAGAATTTCACGTTGATGTCAATATTGTGGCATCCAATTTATGTTATGACGATGGAGATAATCTGTAGTTGGGATATTACCACCAGAAGCAATGGCTTCGTTCAAACTTATATTTTGCTTGTTATTGGGATATTACCACTGCTCGACATACTGGAATGTAGGCAAATCTCACATTCATGCAACATCCGAAGGAGGTTTCTGTTTGCCAATATGCTTGCTTCCTGCTAGTATTGAACCGTTTATTTATTGGCAACTAGAAATAATCTGTAGATGATGTTCATAGAATGTCCACGCAAATTCTGCGTTCAAAATTAGTTCAATTTGTAAATTGTGTAGTATAGTTTGTTCATGCGATTCCATGAACACTGAACTGTTGTCTTGTAAGCATATATTGAAAAAATTGCCTGTTGTAAGAATAGGAAATGTATAATTTCAGAATATTAATGTATAGTAAGCAGACCGATACCCCTTTATTTGCAGGGTTAGCAGTGTAATTAAGCCAACAATCGAATCTGGATTAATTAATTAATTAGTGCTTATTAG

Network for GWHGAAZE014094

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04571.15	Lipin_N	12	96	3.30E-27
PF08235.14	LNS2	671	893	1.60E-96

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15728	LPIN	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerolipid metabolism	map00561
		Glycerophospholipid metabolism	map00564
		mTOR signaling pathway	map04150

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.871
	SRR3591706	second leaf	11.262
	SRR3591707	mature leaf	13.012
	SRR3591708	Shoot apex	11.267
	SRR3591709	Stem	27.365
	SRR3591710	White floral bud	14.665
	SRR3591711	White flower	19.305
	SRR3591712	Green floral bud	14.501
	SRR3591713	Yellow flower	23.175
SRP173429	SRR8316895	Juvenile bud stage	6.077
	SRR8316896	Juvenile bud stage	7.193
	SRR8316897	Juvenile bud stage	3.737
	SRR8316894	Third green stage	5.664
	SRR8316900	Third green stage	10.041
	SRR8316901	Third green stage	10.056
	SRR8316898	Complete white stage	2.587
	SRR8316899	Complete white stage	8.203
	SRR8316903	Complete white stage	5.328
	SRR8316902	Silver flowering stage	4.021
	SRR8316904	Silver flowering stage	7.362
	SRR8316905	Silver flowering stage	3.394
	SRR8316906	Gold flowering stage	10.962
	SRR8316907	Gold flowering stage	15.941
	SRR8316908	Gold flowering stage	15.716
SRP132670	SRR6706286	Control	5.296
	SRR6706287	Light intensity 50%	5.517
	SRR6706288	Light intensity 20%	5.903
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.445
	CNS0095593	Slightly white alabastrum(diploid) 2	6.009
	CNS0095594	Slightly white alabastrum(diploid) 3	5.237
	CNS0095595	Whole white alabastrum(diploid) 2	7.134
	CNS0095596	Whole white alabastrum(diploid) 3	6.073
	CNS0095597	Whole white alabastrum(diploid) 4	7.413
	CNS0095598	Silvery flower (diploied) 1	10.653
	CNS0095599	Silvery flower (diploied) 2	7.621
	CNS0095600	Silvery flower (diploied) 3	8.325
	CNS0095601	Golden flower (diploid) 1	7.346
	CNS0095602	Golden flower (diploid) 2	13.605
	CNS0095603	Golden flower (diploid) 3	12.647
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.408
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.473
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.783
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.572
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.386
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.438
	CNS0095610	Silvery flower (tetraploid) 1	14.753
	CNS0095611	Silvery flower (tetraploid) 2	11.163
	CNS0095612	Silvery flower (tetraploid) 3	13.811
	CNS0095613	Golden flower (tetraploid) 1	7.776
	CNS0095614	Golden flower (tetraploid) 2	14.749
	CNS0095615	Golden flower (tetraploid) 3	23.917
CRA001975	CRR073297	Stem 1	7.235
	CRR073298	Stem 2	6.757
	CRR073299	Stem 3	4.533
	CRR073300	Leaf 1	6.485
	CRR073301	Leaf 2	6.166
	CRR073302	Leaf 3	4.581
	CRR073303	Juvenile bud 1	3.188
	CRR073304	Juvenile bud 2	2.328
	CRR073305	Juvenile bud 3	3.096
	CRR073306	Third green 1	7.017
	CRR073307	Third green 2	3.107
	CRR073308	Third green 3	5.253
	CRR073309	Second white 1	3.397
	CRR073310	Second white 2	8.341
	CRR073311	Second white 3	9.729
	CRR073312	Silver flowering 1	5.673
	CRR073313	Silver flowering 2	4.508
	CRR073314	Silver flowering 3	4.658
	CRR073315	Gold flowering 1	2.639
	CRR073316	Gold flowering 2	4.006
	CRR073317	Gold flowering 3	1.224
	CRR073318	Tawny withering 1	4.318
	CRR073319	Tawny withering 2	3.803
	CRR073320	Tawny withering 3	3.376