Gene detail

Detail information of GWHGAAZE013993

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009775389.1	PREDICTED: glucose-6-phosphate isomerase, cytosolic isoform X2 [Nicotiana sylvestris]
Swissprot	tr\|P54243\|G6PI_OENME	Glucose-6-phosphate isomerase, cytosolic
trEMBL	tr\|A0A076FN11\|A0A076FN11_TOBAC	Glucose-6-phosphate isomerase {ECO:0000256\|RuleBase:RU000612}
TAIR10	AT5G42740.1	Sugar isomerase (SIS) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	4138624	4147215	+
GWHAAZE00000004	mRNA	4138624	4147215	+
GWHAAZE00000004	exon	4138624	4138734	+
GWHAAZE00000004	exon	4138805	4138855	+
GWHAAZE00000004	exon	4138949	4139025	+
GWHAAZE00000004	exon	4139177	4139261	+
GWHAAZE00000004	exon	4139349	4139396	+
GWHAAZE00000004	exon	4139675	4139830	+
GWHAAZE00000004	exon	4139903	4139999	+
GWHAAZE00000004	exon	4140154	4140196	+
GWHAAZE00000004	exon	4140584	4140651	+
GWHAAZE00000004	exon	4140789	4140873	+
GWHAAZE00000004	exon	4141303	4141351	+
GWHAAZE00000004	exon	4143119	4143191	+
GWHAAZE00000004	exon	4143293	4143353	+
GWHAAZE00000004	exon	4143885	4143951	+
GWHAAZE00000004	exon	4144093	4144149	+
GWHAAZE00000004	exon	4144235	4144288	+
GWHAAZE00000004	exon	4144386	4144514	+
GWHAAZE00000004	exon	4144811	4144874	+
GWHAAZE00000004	exon	4144968	4145041	+
GWHAAZE00000004	exon	4145274	4145327	+
GWHAAZE00000004	exon	4145405	4145473	+
GWHAAZE00000004	exon	4145976	4146065	+
GWHAAZE00000004	exon	4146241	4146348	+
GWHAAZE00000004	exon	4146930	4147215	+
GWHAAZE00000004	CDS	4138624	4138734	+
GWHAAZE00000004	CDS	4138805	4138855	+
GWHAAZE00000004	CDS	4138949	4139025	+
GWHAAZE00000004	CDS	4139177	4139261	+
GWHAAZE00000004	CDS	4139349	4139396	+
GWHAAZE00000004	CDS	4139675	4139830	+
GWHAAZE00000004	CDS	4139903	4139999	+
GWHAAZE00000004	CDS	4140154	4140196	+
GWHAAZE00000004	CDS	4140584	4140651	+
GWHAAZE00000004	CDS	4140789	4140873	+
GWHAAZE00000004	CDS	4141303	4141351	+
GWHAAZE00000004	CDS	4143119	4143191	+
GWHAAZE00000004	CDS	4143293	4143353	+
GWHAAZE00000004	CDS	4143885	4143951	+
GWHAAZE00000004	CDS	4144093	4144149	+
GWHAAZE00000004	CDS	4144235	4144288	+
GWHAAZE00000004	CDS	4144386	4144514	+
GWHAAZE00000004	CDS	4144811	4144874	+
GWHAAZE00000004	CDS	4144968	4145041	+
GWHAAZE00000004	CDS	4145274	4145327	+
GWHAAZE00000004	CDS	4145405	4145473	+
GWHAAZE00000004	CDS	4145976	4146065	+
GWHAAZE00000004	CDS	4146241	4146348	+
GWHAAZE00000004	CDS	4146930	4146980	+
GWHAAZE00000004	three_prime_UTR	4146981	4147215	+

Transcript Sequence
>GWHTAAZE014007 TCCCTGTCTCGTATATACTTTCGTGCAAGGCTTGAGATTGCCAATGTGAGATTTGAATTCTCAAACGATCGAAACATATCTTATTCTTTGGAAACCCCTCCTGATATAGAAATGGCTTCATCTGCGTTAATCTGTGACACACAACCTTGGAAGGACTTGAAGGTCCATGTAGAAGACATTAAAAAGACTCATTTACGTGATTTGATGAATGATACTGGTCGGTGCAAGGCAATGATGGTTGAGTTTGATGGGATAGTCTTAGACTACTCAAGGCAGTGTGCCACTCTTGACAGTTTCGATAAGCTCTTCAAATTAGCAGAGGTGGTAGCACATCTTAAACAAAAGATCAACAGTATGTTCAGTGGGGAGCGTATAAACAGCACAGAGAATAGGTCTGTCCTTCATGTAGCTCTCCGTGCTTCAAAAGACTCAGTTATTAACAGTGATGGGAAGAATGTGGTCCCTGATGTTTGGCAAGTACTGGACAAGATTTGTGATTTCTCTGAGAGGGTCCGCAGTGGTTCTTGGGTTGGAGCCACTGGAAAGGCACTCAAGGATGTTATTGCTATTGGCATTGGTGGCAGCTTCTTAGGTCCTTTGTTTGTCCATACGGCTCTTCAAACAGATCCAGAGACTATCGAATGTGCAAGAGGACGCCAGCTGCGTTTTCTAGCGAATGTTGATCCAATAGACGTTGCTAGAAATATCAAAGGCTTGAACCCTGAAACGACATTAGTTGTTGTGGTCTCAAAAACATTTACAACTGCTGAAACCATGCTGAATGCTAGGACATTAAGGGAATGGATCTCATCCGCTTTGGGGCCTGAAGCAGTTGCAAAGCATATGGTTGCTGTCAGTACCAATCTTACGCTTGTGGAAAAGTTTGGAATTGATCCTAATAATGCTTTTGCATTCTGGGATTGGGTGGGAGGCCGATATAGTGTTTGCAGCGCTGTTGGAGTATTGCCCTTATCTCTCCAATACGGCTTCTCTGTTATTGAAAAGTTCCTGAAGGGAGCTTCTAGCATTGATCAACACTTCTATTCTACACCGTTAGAAAAAAATATACCTGTGCTTTTGGGTTTGTTGAGCGTATGGAATGTTTCATTTCTTGGATATCCTGCAAGAGCCATTTTACCTTATTCTCAAGCCCTGGAGAAATTAGCTCCGCATATTCAGCAGGTTAGTATGGAGAGTAACGGGAAAGGGGTATCAATTGATGGTGTGCCTCTACCTTTTGAGGCTGGTGAAATTGATTTCGGTGAACCAGGAACAAATGGTCAGCACAGCTTTTACCAATTAATTCACCAGGGACGTGTTATTCCTTGTGATTTCATTGGTGTCGTGAATAGTCAGCAGCCAGTGTACCTCAAAGATGAAGTAGTGAATAACCACGACGAGCTCATGTCTAACTTTTTTGCACAGCCAGACGCCCTTGCTTATGGGAAGACCCCAGAACAGCTGCTAACGGAGAATGTTGCCCACAATCTTATTCCTCACAAGACCTTCTCTGGAAATAGACCTTCTGTCAGCCTTCTGCTCCCATCATTGAATGCTTATAATATTGGACAGTTGTTGGCAATCTACGAACACAGAATTGCTGTTGAAGGATTCATTTGGGGTATCAATTCTTTCGACCAGTGGGGAGTTGAGTTGGGAAAGTCACTGGCTTCCCAAGTCAGAAAGCAACTTCACGCATCTCGTAAGAAAGGAGGACCAGTTGAGGGCTTCAATTTCAGTACTACAGCAATGTTAACACGGTATCTAGAGGCAAGTGCAGATGTTCCTTCGGATCCTTCCACCCTTCTACCAAAGATATAAGGCCTCATACGTCAGCTTCAGTCAAATAGGGGCATAATCATCTATAACTTGCTAAGAGTTTAATATTTTATACCCAAACATCAGTGTTAATTGCCGCTTGAGCTTGCTTCCTTTTTTTTTTACTCTGCAGAACTCAATTCTTGTAAGTAGTTACTTGCTATTTTCCTTAATAGTTCACATACTTGAACCTGACTGCCCTTAAATTTTGAAATAAATTGGTGAGACTTCTTGAGAA

Network for GWHGAAZE013993

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00342.20	PGI	88	584	3.10E-217

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01810	GPI, pgi	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glycolysis / Gluconeogenesis	map00010
		Pentose phosphate pathway	map00030
		Starch and sucrose metabolism	map00500
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0006094	biological_process	gluconeogenesis
GO:0006096	biological_process	glycolytic process
GO:0004347	molecular_function	glucose-6-phosphate isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.195
	SRR3591706	second leaf	21.705
	SRR3591707	mature leaf	33.756
	SRR3591708	Shoot apex	11.993
	SRR3591709	Stem	34.514
	SRR3591710	White floral bud	49.935
	SRR3591711	White flower	54.053
	SRR3591712	Green floral bud	46.537
	SRR3591713	Yellow flower	59.782
SRP173429	SRR8316895	Juvenile bud stage	20.931
	SRR8316896	Juvenile bud stage	37.947
	SRR8316897	Juvenile bud stage	16.317
	SRR8316894	Third green stage	15.595
	SRR8316900	Third green stage	47.916
	SRR8316901	Third green stage	44.330
	SRR8316898	Complete white stage	19.845
	SRR8316899	Complete white stage	35.434
	SRR8316903	Complete white stage	34.687
	SRR8316902	Silver flowering stage	32.242
	SRR8316904	Silver flowering stage	42.913
	SRR8316905	Silver flowering stage	22.377
	SRR8316906	Gold flowering stage	60.104
	SRR8316907	Gold flowering stage	64.619
	SRR8316908	Gold flowering stage	60.445
SRP132670	SRR6706286	Control	28.331
	SRR6706287	Light intensity 50%	29.882
	SRR6706288	Light intensity 20%	32.181
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.884
	CNS0095593	Slightly white alabastrum(diploid) 2	26.563
	CNS0095594	Slightly white alabastrum(diploid) 3	32.607
	CNS0095595	Whole white alabastrum(diploid) 2	30.434
	CNS0095596	Whole white alabastrum(diploid) 3	38.775
	CNS0095597	Whole white alabastrum(diploid) 4	35.786
	CNS0095598	Silvery flower (diploied) 1	39.943
	CNS0095599	Silvery flower (diploied) 2	34.846
	CNS0095600	Silvery flower (diploied) 3	63.243
	CNS0095601	Golden flower (diploid) 1	42.566
	CNS0095602	Golden flower (diploid) 2	65.266
	CNS0095603	Golden flower (diploid) 3	65.266
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.548
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.058
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.943
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.814
	CNS0095608	Whole white alabastrum(tetraploid) 2	40.239
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.473
	CNS0095610	Silvery flower (tetraploid) 1	67.582
	CNS0095611	Silvery flower (tetraploid) 2	63.819
	CNS0095612	Silvery flower (tetraploid) 3	52.461
	CNS0095613	Golden flower (tetraploid) 1	63.759
	CNS0095614	Golden flower (tetraploid) 2	76.433
	CNS0095615	Golden flower (tetraploid) 3	98.292
CRA001975	CRR073297	Stem 1	24.610
	CRR073298	Stem 2	23.033
	CRR073299	Stem 3	17.866
	CRR073300	Leaf 1	37.446
	CRR073301	Leaf 2	35.177
	CRR073302	Leaf 3	26.025
	CRR073303	Juvenile bud 1	38.277
	CRR073304	Juvenile bud 2	29.815
	CRR073305	Juvenile bud 3	38.526
	CRR073306	Third green 1	23.239
	CRR073307	Third green 2	20.740
	CRR073308	Third green 3	20.251
	CRR073309	Second white 1	28.030
	CRR073310	Second white 2	24.323
	CRR073311	Second white 3	29.432
	CRR073312	Silver flowering 1	34.443
	CRR073313	Silver flowering 2	34.405
	CRR073314	Silver flowering 3	34.922
	CRR073315	Gold flowering 1	15.710
	CRR073316	Gold flowering 2	29.097
	CRR073317	Gold flowering 3	15.643
	CRR073318	Tawny withering 1	33.119
	CRR073319	Tawny withering 2	31.197
	CRR073320	Tawny withering 3	27.768