Detail information of GWHGAAZE013979


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009760261.10PREDICTED: 3-ketoacyl-CoA synthase 4 [Nicotiana sylvestris]
Swissprottr|Q9LN49|KCS4_ARATH03-ketoacyl-CoA synthase 4
trEMBLtr|K4BVC4|K4BVC4_SOLLC03-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417}
TAIR10AT1G19440.103-ketoacyl-CoA synthase 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene39071083908685-
GWHAAZE00000004mRNA39071083908685-
GWHAAZE00000004exon39071083908685-
GWHAAZE00000004CDS39071083908685-
Transcript Sequence

Network for GWHGAAZE013979

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08392.13FAE1_CUT1_RppA1134023.60E-147
PF08541.11ACP_syn_III_C4184992.00E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15397KCS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Fatty acid elongationmap00062
Plant-pathogen interactionmap04626

Gene Ontology

GO term OntologyName
GO:0006633biological_processfatty acid biosynthetic process
GO:0016020cellular_componentmembrane
GO:0016747molecular_functiontransferase activity, transferring acyl groups other than amino-acyl groups
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf39.496
SRR3591706second leaf18.549
SRR3591707mature leaf22.252
SRR3591708Shoot apex25.780
SRR3591709Stem35.892
SRR3591710White floral bud220.186
SRR3591711White flower115.837
SRR3591712Green floral bud258.034
SRR3591713Yellow flower104.452
SRP173429 SRR8316895Juvenile bud stage 45.957
SRR8316896Juvenile bud stage 116.460
SRR8316897Juvenile bud stage 63.055
SRR8316894Third green stage 55.704
SRR8316900Third green stage 212.617
SRR8316901Third green stage 236.728
SRR8316898Complete white stage 28.632
SRR8316899Complete white stage 55.461
SRR8316903Complete white stage 33.523
SRR8316902Silver flowering stage39.418
SRR8316904Silver flowering stage59.000
SRR8316905Silver flowering stage30.214
SRR8316906Gold flowering stage 114.634
SRR8316907Gold flowering stage 98.169
SRR8316908Gold flowering stage 137.876
SRP132670SRR6706286Control147.778
SRR6706287Light intensity 50%142.750
SRR6706288Light intensity 20%133.433
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1266.175
CNS0095593Slightly white alabastrum(diploid) 2218.156
CNS0095594Slightly white alabastrum(diploid) 3320.081
CNS0095595Whole white alabastrum(diploid) 2436.262
CNS0095596Whole white alabastrum(diploid) 3499.255
CNS0095597Whole white alabastrum(diploid) 4563.548
CNS0095598Silvery flower (diploied) 150.722
CNS0095599Silvery flower (diploied) 274.357
CNS0095600Silvery flower (diploied) 3103.852
CNS0095601Golden flower (diploid) 152.346
CNS0095602Golden flower (diploid) 2107.661
CNS0095603Golden flower (diploid) 3101.487
CNS0095604Slightly white alabastrum(tetraploid) 1397.262
CNS0095605Slightly white alabastrum(tetraploid) 2450.500
CNS0095606Slightly white alabastrum(tetraploid) 380.295
CNS0095607Whole white alabastrum(tetraploid) 1587.106
CNS0095608Whole white alabastrum(tetraploid) 2585.796
CNS0095609Whole white alabastrum(tetraploid) 3343.680
CNS0095610Silvery flower (tetraploid) 192.272
CNS0095611Silvery flower (tetraploid) 283.148
CNS0095612Silvery flower (tetraploid) 3130.727
CNS0095613Golden flower (tetraploid) 176.634
CNS0095614Golden flower (tetraploid) 2101.259
CNS0095615Golden flower (tetraploid) 3122.328
CRA001975CRR073297Stem 1109.458
CRR073298Stem 2122.002
CRR073299Stem 3123.941
CRR073300Leaf 1219.699
CRR073301Leaf 2170.113
CRR073302Leaf 3171.898
CRR073303Juvenile bud 1182.889
CRR073304Juvenile bud 2140.633
CRR073305Juvenile bud 3106.560
CRR073306Third green 1171.018
CRR073307Third green 2169.944
CRR073308Third green 3158.809
CRR073309Second white 1210.464
CRR073310Second white 2100.934
CRR073311Second white 3108.056
CRR073312Silver flowering 1222.703
CRR073313Silver flowering 2296.001
CRR073314Silver flowering 3187.249
CRR073315Gold flowering 178.741
CRR073316Gold flowering 242.056
CRR073317Gold flowering 371.576
CRR073318Tawny withering 187.298
CRR073319Tawny withering 279.881
CRR073320Tawny withering 371.634