Gene detail

Detail information of GWHGAAZE013931

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009769606.1	PREDICTED: V-type proton ATPase subunit a2-like [Nicotiana sylvestris]
Swissprot	tr\|Q9SJT7\|VHAA2_ARATH	V-type proton ATPase subunit a2
trEMBL	tr\|M1CPE5\|M1CPE5_SOLTU	V-type proton ATPase subunit a {ECO:0000256\|RuleBase:RU361189}
TAIR10	AT4G39080.1	vacuolar proton ATPase A3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	3078759	3090055	+
GWHAAZE00000004	mRNA	3078759	3090055	+
GWHAAZE00000004	exon	3078759	3078899	+
GWHAAZE00000004	exon	3080075	3080186	+
GWHAAZE00000004	exon	3080311	3080366	+
GWHAAZE00000004	exon	3082956	3083000	+
GWHAAZE00000004	exon	3083478	3083597	+
GWHAAZE00000004	exon	3083674	3083781	+
GWHAAZE00000004	exon	3083922	3084032	+
GWHAAZE00000004	exon	3084128	3084301	+
GWHAAZE00000004	exon	3084858	3084995	+
GWHAAZE00000004	exon	3085554	3085661	+
GWHAAZE00000004	exon	3085780	3085887	+
GWHAAZE00000004	exon	3086004	3086152	+
GWHAAZE00000004	exon	3086329	3086482	+
GWHAAZE00000004	exon	3087737	3087897	+
GWHAAZE00000004	exon	3088036	3088242	+
GWHAAZE00000004	exon	3088420	3088603	+
GWHAAZE00000004	exon	3088698	3088781	+
GWHAAZE00000004	exon	3088872	3089065	+
GWHAAZE00000004	exon	3089666	3089725	+
GWHAAZE00000004	exon	3089851	3090055	+
GWHAAZE00000004	CDS	3078759	3078899	+
GWHAAZE00000004	CDS	3080075	3080186	+
GWHAAZE00000004	CDS	3080311	3080366	+
GWHAAZE00000004	CDS	3082956	3083000	+
GWHAAZE00000004	CDS	3083478	3083597	+
GWHAAZE00000004	CDS	3083674	3083781	+
GWHAAZE00000004	CDS	3083922	3084032	+
GWHAAZE00000004	CDS	3084128	3084301	+
GWHAAZE00000004	CDS	3084858	3084995	+
GWHAAZE00000004	CDS	3085554	3085661	+
GWHAAZE00000004	CDS	3085780	3085887	+
GWHAAZE00000004	CDS	3086004	3086152	+
GWHAAZE00000004	CDS	3086329	3086482	+
GWHAAZE00000004	CDS	3087737	3087897	+
GWHAAZE00000004	CDS	3088036	3088242	+
GWHAAZE00000004	CDS	3088420	3088603	+
GWHAAZE00000004	CDS	3088698	3088781	+
GWHAAZE00000004	CDS	3088872	3089065	+
GWHAAZE00000004	CDS	3089666	3089725	+
GWHAAZE00000004	CDS	3089851	3090055	+

Transcript Sequence
>GWHTAAZE013945 ATGGCGGAAGGAGGGTGTTGCCCGACGATGGATCTGTTACGTTCGGAACAGATGCAATTGGTGCAGTTCATCATCCCTATTGAATCCGCTCATCGCACAATTTCCTATCTCGGAGATCTCGGCCTCTTTCAATTCAAAGACGGTGATGATGTTCGATCGACGAACCGAACGAAGCGAGGTCCGGGTAAATTCCGAGACTTGATCTTGATCCGAATCGGCGATAATGCTGAAATTGAGATCGAAATACTTGGAGAGATAAAGCAAGTCCGATATGAAGGCGCGGAAGATTTTGAGTTGAGTAGTTCTGGACTCAATGCTGAAAGGAGCCCATTTCAGAGGACATATGCTGCTCAGATCAAAAGATGTGGGGAGATGGCACGCAAGCTAAGGTTTTTCAGGGAACAAATGATGAAGGCAGGTTTCTCACCCTCGACGATGTCCACGGGCAGAGACGTCAATATGGACGATTTGGAGGTAAAACTTGGAGAACTCGAAGCTGAGCTAATAGAGATGAATGCTAATAGTGAGAAGCTACAACGTGCTCATAGTGAACTTTTAGAATATAAACTGGTTTTGCAGAAGGCGGGTGAGTATTTTTCTTCAGCTCAAAGTAGAGCGACGGCTCAGCAGAGAGAATTTAAAGAACATCGTCTTGGTGAAGGATCTATTGATAGTCCTCTATTATTGGAACAAGAAATGTCAACTGATCCTTCAAAGCAAGTTAAGCTGGGATTTGTCAGTGGCCTTGTCCCACGAGAAAAATCAATGGCTTTTGAGAGGATCTTATTCCGTGCAACCAGGGGTAACGTGTTTCTGAAACAAGCTGTTGTTGAAGATCCTGTTATTGATCCTGTGTCAAGTGAAAAGGTTGAGAAAAATGTATTTGTTGTCTTTTATTCTGGAGAAAGAGCAAAGAACAAAATATTGAAAATATGTGATGCATTTGGAGCAAACCGTTATCCATTTACAGATGACCTAGGCAAACAGTATCTGATGATCAATGAGGTATCTGGAAAACTTTCAGAGCTGAATACTACCATAGATGTTGGACTACAGCACCGGGGAAATCTTTTACAGACTATTGGATTTCAACTTGAGCAATGGAGCCTTCTGGTGAAGAAGGAAAAATCTATATTCCACACCCTAAATATGCTCAGTTTTGATGTGACAAAAAAGTGCCTCGTAGCAGAAGGCTGGTGTCCTGTTTTTGCAACAAATCAGATTCAAACGACATTGCAACGGGCTACCCTTGACAGCAATTCCCAAGTTGGGGCGATATTCCAGGCTCTGCATTCCAAGGAATTACCGCCAACTTACTTCCGCACAAACAAATTCACTACTGCTTTTCAAGAAATTGTTGATGCGTATGGGGTGGCGAAATACCAGGAAGCAAACCCTGGCGTATACACTATTGTTACATTTCCGTTCCTATTTGCCATCATGTTTGGAGATTGGGGGCATGGTATATGTTTGTTTTTAGCAACTTTATATTTCATATTGAGGGAGAAGAAACTTTCTAGTCAGAAGCTTGGAGACATCATGGAGATGACTTTTGGTGGTCGCTATGTTATTATAATGATGTCACTGTTTTCAATATACACAGGCCTGATATATAATGAATTCTTTTCTGTCCCATTTGAACTATTTGGGCGCTCCTCCTATGAATGCCGTGACCCTTCCTGCAGGGATGCTACTAGTGTGGGATTGATTAAATCGCATGACACTTACCCGTTTGGTGTGGATCCTAAATGGCATGGTACCCGTAGCGAGTTGCCATTCCTTAACTCGTTGAAGATGAAGATGTCAATCTTACTGGGAGTAGCTCAAATGAATCTTGGAATCATTTTGAGCTATTATAATGCAAAATTCTTTCGAAATGACTTGAATATCTGGTACGAATTTGTTCCTCAGATGATATTTCTAAATGGCTTGTTTGGCTACCTTTCACTCCTCATAATTGTGAAGTGGTGCACCGGTTCAAAAGCTGATTTGTACCATGTAATGATATACATGTTCCTTAGCCCGACCGATGACTTGGGCGAGAATCAGCTGTTTATTGGCCAGAAATACCTTCAGCTTGTGCTATTATTTCTGGCACTTGTTGCTGTGCCTTGGATGCTGATCCCAAAGCCACTTCTTTTGAAGAAGCAACATGAAGAAAGACACCAAGGCCAAACCTACACACAACTTCAAAGTGTTGATGACAATCTTGAAGTGGAGTCGCACAAAGATTCACATGGACACGAGGAATTTGAGTTCAGTGAAGTTTTTGTGCATCAACTTATACATACTATTGAGTTTGTTCTTGGTGCGGTTTCTAATACGGCATCGTACCTACGTTTGTGGGCACTGAGTCTTGCACATTCGGAGTTGTCAAGTGTATTTTATGAAAAGGTTCTGCTTCTTGCCTGGGGGTTCAACAATGTCGTTATCCTTAGTATCGGCATAATTGTATTTATTTTTGCAACCGTTGGTGTGCTGCTAGTGATGGAAACCCTAAGTGCATTCCTCCACGCGTTGAGGCTTCACTGGGTGGAGTTTCAGAACAAGTTCTACGAGGGAGACGGTTACAAATTCTTCCCATTCTCGTTTGCATTACTTAGTCAAGACGAGGAATAA

Network for GWHGAAZE013931

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01496.20	V_ATPase_I	104	864	7.60E-288

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02154	ATPeV0A, ATP6N	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Phagosome	map04145
		Lysosome	map04142
		Collecting duct acid secretion	map04966
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:1902600	biological_process	proton transmembrane transport
GO:0033179	cellular_component	proton-transporting V-type ATPase, V0 domain
GO:0000220	cellular_component	vacuolar proton-transporting V-type ATPase, V0 domain
GO:0015078	molecular_function	proton transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.236
	SRR3591706	second leaf	1.414
	SRR3591707	mature leaf	0.123
	SRR3591708	Shoot apex	1.276
	SRR3591709	Stem	23.625
	SRR3591710	White floral bud	13.759
	SRR3591711	White flower	3.093
	SRR3591712	Green floral bud	27.710
	SRR3591713	Yellow flower	5.317
SRP173429	SRR8316895	Juvenile bud stage	7.233
	SRR8316896	Juvenile bud stage	18.662
	SRR8316897	Juvenile bud stage	7.241
	SRR8316894	Third green stage	8.434
	SRR8316900	Third green stage	24.133
	SRR8316901	Third green stage	24.150
	SRR8316898	Complete white stage	7.680
	SRR8316899	Complete white stage	2.621
	SRR8316903	Complete white stage	10.538
	SRR8316902	Silver flowering stage	3.647
	SRR8316904	Silver flowering stage	6.539
	SRR8316905	Silver flowering stage	3.192
	SRR8316906	Gold flowering stage	8.276
	SRR8316907	Gold flowering stage	7.760
	SRR8316908	Gold flowering stage	4.225
SRP132670	SRR6706286	Control	15.035
	SRR6706287	Light intensity 50%	13.682
	SRR6706288	Light intensity 20%	13.428
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.700
	CNS0095593	Slightly white alabastrum(diploid) 2	15.620
	CNS0095594	Slightly white alabastrum(diploid) 3	21.939
	CNS0095595	Whole white alabastrum(diploid) 2	36.003
	CNS0095596	Whole white alabastrum(diploid) 3	39.834
	CNS0095597	Whole white alabastrum(diploid) 4	41.321
	CNS0095598	Silvery flower (diploied) 1	1.109
	CNS0095599	Silvery flower (diploied) 2	2.047
	CNS0095600	Silvery flower (diploied) 3	11.357
	CNS0095601	Golden flower (diploid) 1	1.691
	CNS0095602	Golden flower (diploid) 2	8.400
	CNS0095603	Golden flower (diploid) 3	7.673
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.697
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.111
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.228
	CNS0095607	Whole white alabastrum(tetraploid) 1	61.430
	CNS0095608	Whole white alabastrum(tetraploid) 2	71.359
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.247
	CNS0095610	Silvery flower (tetraploid) 1	8.863
	CNS0095611	Silvery flower (tetraploid) 2	7.084
	CNS0095612	Silvery flower (tetraploid) 3	14.565
	CNS0095613	Golden flower (tetraploid) 1	4.904
	CNS0095614	Golden flower (tetraploid) 2	9.734
	CNS0095615	Golden flower (tetraploid) 3	7.949
CRA001975	CRR073297	Stem 1	7.010
	CRR073298	Stem 2	7.674
	CRR073299	Stem 3	5.108
	CRR073300	Leaf 1	17.275
	CRR073301	Leaf 2	11.692
	CRR073302	Leaf 3	9.185
	CRR073303	Juvenile bud 1	16.084
	CRR073304	Juvenile bud 2	15.909
	CRR073305	Juvenile bud 3	4.879
	CRR073306	Third green 1	12.388
	CRR073307	Third green 2	11.613
	CRR073308	Third green 3	12.865
	CRR073309	Second white 1	9.359
	CRR073310	Second white 2	6.775
	CRR073311	Second white 3	7.018
	CRR073312	Silver flowering 1	9.430
	CRR073313	Silver flowering 2	9.199
	CRR073314	Silver flowering 3	10.429
	CRR073315	Gold flowering 1	3.343
	CRR073316	Gold flowering 2	0.671
	CRR073317	Gold flowering 3	2.236
	CRR073318	Tawny withering 1	7.056
	CRR073319	Tawny withering 2	7.240
	CRR073320	Tawny withering 3	9.417