Gene detail

Detail information of GWHGAAZE013890

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010109992.1	Endoplasmin-like protein [Morus notabilis]
Swissprot	tr\|P35016\|ENPL_CATRO	Endoplasmin homolog (Precursor)
trEMBL	tr\|W9SBY5\|W9SBY5_9ROSA	Endoplasmin-like protein {ECO:0000313\|EMBL:EXC25010.1}
TAIR10	AT4G24190.1	Chaperone protein htpG family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	2251051	2255675	+
GWHAAZE00000004	mRNA	2251051	2255675	+
GWHAAZE00000004	exon	2251051	2251117	+
GWHAAZE00000004	exon	2251261	2251381	+
GWHAAZE00000004	exon	2251480	2251633	+
GWHAAZE00000004	exon	2251727	2251807	+
GWHAAZE00000004	exon	2251906	2252017	+
GWHAAZE00000004	exon	2252102	2252228	+
GWHAAZE00000004	exon	2252565	2252703	+
GWHAAZE00000004	exon	2253187	2253301	+
GWHAAZE00000004	exon	2253423	2253622	+
GWHAAZE00000004	exon	2253728	2253943	+
GWHAAZE00000004	exon	2254053	2254215	+
GWHAAZE00000004	exon	2254434	2254575	+
GWHAAZE00000004	exon	2254666	2254816	+
GWHAAZE00000004	exon	2254944	2255348	+
GWHAAZE00000004	exon	2255427	2255675	+
GWHAAZE00000004	CDS	2251051	2251117	+
GWHAAZE00000004	CDS	2251261	2251381	+
GWHAAZE00000004	CDS	2251480	2251633	+
GWHAAZE00000004	CDS	2251727	2251807	+
GWHAAZE00000004	CDS	2251906	2252017	+
GWHAAZE00000004	CDS	2252102	2252228	+
GWHAAZE00000004	CDS	2252565	2252703	+
GWHAAZE00000004	CDS	2253187	2253301	+
GWHAAZE00000004	CDS	2253423	2253622	+
GWHAAZE00000004	CDS	2253728	2253943	+
GWHAAZE00000004	CDS	2254053	2254215	+
GWHAAZE00000004	CDS	2254434	2254575	+
GWHAAZE00000004	CDS	2254666	2254816	+
GWHAAZE00000004	CDS	2254944	2255348	+
GWHAAZE00000004	CDS	2255427	2255675	+

Transcript Sequence
>GWHTAAZE013904 ATGAGGAAGTGGACGGTACCTTCCGTTCTGTTTCTCTTATGTCTTCTATTTCTCCTCCCCGATCAAGGTCGGAATTTACAAGCAAATGCAGAAGGTGATTCGGAAGAACTTGTAGATCCACCAAAGGTTGAAGAAAAGATCGGTGCTGTTCCTAATGGTTTATCAACAGATGCCGATGTCGCTAAGAGGGAATCTGAGTCAATGTCAAGGAAGACACTACGCAATAATGCGGAAAAGTTTGAGTTTCAGGCTGAGGTGTCTCGACTTATGGACATCATCATCAATTCTCTTTATAGCAACAAAGATATTTTCTTGAGAGAGTTAATCTCTAATGCATCTGATGCATTGGACAAGATTAGATTCCTCTCACTAACTGATAAGGAGGTGTTGGGTGAAGGTGATGATGCTAAGCTCGAGATTCAGATTAAATTGGACAAAGAGAAAAAAATTATTTCACTCCGCGATAGAGGTATAGGTATGACTAAGGAGGACTTGATCAAGAACTTGGGAACTATTGCTAAATCTGGAACTTCAGCTTTCGTGGAGAAAATGCAGACAAGTGGAGACCTTAATCTCATTGGACAGTTTGGTGTCGGGTTTTACTCTGTATATCTTGTTGCCGATTATGTTGAAGTCATTAGCAAACACAATGATGACAAACAGTATGTGTGGGAGTCAAAGGCTGATGGGGCTTTTGCAATTTCCGAAGATGTGTGGAATGAACCACTTGGACGAGGAACTGAGATCCGTCTACACCTAAGAGATGAAGCTGGGGAATACTTGGATGAATTCAAATTGAAGGACTTGGTGAAGAAATATTCTGAATTCATCAATTTTCCTATACACCTTTGGGCAAGCAAAGAGGTTGATGTGGAGGTTCCTGCTGATGAAGATGAGAGTGAGGAAGAGGAAAAATCCGAGACCACTTCTTCTGAAGAAGAGGAGGAAGAGGATTCTGAGAAAGGGGAAGAAGGTGAAAAGAAACCTAAAACAAAAACAGTGAAGGAAACAACTTATGAGTGGGAGCTTTTGAATGATGTGAAAGCTATATGGCTACGGAATCCAAAGGAAGTGACAGAGGAAGAGTATGCAAAATTCTACAAGTCTCTTGCCAAGGATTTCAGTGATGAGAAGCCAATGGCGTGGAGTCACTTCAATGCTGAAGGAGATGTTGAGTTCAAGGCTGTACTCTTTGTGCCTCCCAAGGCTCCTCATGATTTGTACGAGAGTTACTACAATGCAAACAAGTCTAACTTGAAGTTATACGTTAGACGGGTTTTTATCTCCGATGAATTCGACGAGCTTTTGCCCAAGTATTTGAGCTTCTTGAAGGGTCTTGTCGATTCCGACACCTTACCACTTAACGTGTCGAGAGAAATGCTTCAACAACACAGCAGTTTGAAAACGATCAAGAAGAAACTCATCAGGAAGGCACTTGATATGATTCGCAAGATTGCAGAGGAGGATCCAGATGAATCTAAGGATGACAAGAAAGATATTGATGCATCAAATGACGATAATGAGAAGAAAGGTCAATATACAAAGTTCTGGAACGAATTTGGCAAGTCAATAAAGCTTGGTATTATTGAAGATGCGGCCAACCGAAACCGCTTGGCAAAACTTCTACGATTTGAGAGCACAAAGTCGGATGGTAAACTGACTTCTCTAGATCAGTACATCTCAAGGATGAGAAAAGGCCAAAAGGATATCTTCTACATAACAGGGACCAGCAAGGAACAGTTGGCAAAATCACCATTCCTTGAGAGGCTTACTAAGAAGAATTACGAGGTTATTCTCCTCACAGATCCAGTGGATGAGTACTTGATGCAATACCTGATGGATTATGAAGACAAGAAGTTTCAGAATGTGTCCAAGGAGGGCCTCAAACTGGGAAAGGATTCCAAAGACAAAGAGTTGAAGGAATCATTCAAGGAGTTGACCAAATGGTGGAAGGGTGCCCTTGCAAGTGAGAATGTGGATGACGTGAAGATAAGCAACCGTTTAGCCGACACTCCTTGCGTAGTTGTTACATCAAAGTTTGGGTGGAGCGCAAATATGGAGAGGATCATGCAGTCGCAGACTCTTTCGGATGCTAGCAAGCAGGCATACATGCGTGGTAAAAGGGTGCTTGAGATCAACCCTAGACACCCAATCATCAAGGAGCTTCGTGAGAGAGTAGTAAAAGACTCTGAGGATGAGAATGTAAAGCAAACAGCGCAGCTTATGTACCAAACAGCGTTGATGGAGAGTGGCTTCACGCTTACTGACCCCAAGGACTTTGCCTCGCGTATATATAACTCAGTGAAGACAAGTCTTGATATAAGCCCTGATGCTGCAATTGAGGAAGAAGAGGAGGCTGAAGAGCCAGAAAGTGAATCCAAAGAAGGGGCTGATACTACTAAAGCTGATGCTGACGCAGAAGCTGCCAAAGATGAGTTGTAG

Network for GWHGAAZE013890

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02518.27	HATPase_c	101	256	2.90E-12
PF00183.19	HSP90	259	795	2.10E-219

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09487	HSP90B, TRA1	Protein processing in endoplasmic reticulum	map04141
		PI3K-Akt signaling pathway	map04151
		IL-17 signaling pathway	map04657
		Estrogen signaling pathway	map04915
		Thyroid hormone synthesis	map04918
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0005524	molecular_function	ATP binding
GO:0051082	molecular_function	unfolded protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	141.596
	SRR3591706	second leaf	90.724
	SRR3591707	mature leaf	142.601
	SRR3591708	Shoot apex	117.034
	SRR3591709	Stem	68.027
	SRR3591710	White floral bud	97.189
	SRR3591711	White flower	97.200
	SRR3591712	Green floral bud	120.381
	SRR3591713	Yellow flower	404.425
SRP173429	SRR8316895	Juvenile bud stage	149.763
	SRR8316896	Juvenile bud stage	191.836
	SRR8316897	Juvenile bud stage	117.784
	SRR8316894	Third green stage	73.573
	SRR8316900	Third green stage	232.660
	SRR8316901	Third green stage	194.909
	SRR8316898	Complete white stage	50.690
	SRR8316899	Complete white stage	112.609
	SRR8316903	Complete white stage	106.077
	SRR8316902	Silver flowering stage	57.350
	SRR8316904	Silver flowering stage	95.744
	SRR8316905	Silver flowering stage	53.586
	SRR8316906	Gold flowering stage	160.737
	SRR8316907	Gold flowering stage	130.134
	SRR8316908	Gold flowering stage	90.661
SRP132670	SRR6706286	Control	88.693
	SRR6706287	Light intensity 50%	78.490
	SRR6706288	Light intensity 20%	69.647
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	136.418
	CNS0095593	Slightly white alabastrum(diploid) 2	113.496
	CNS0095594	Slightly white alabastrum(diploid) 3	152.711
	CNS0095595	Whole white alabastrum(diploid) 2	85.901
	CNS0095596	Whole white alabastrum(diploid) 3	90.588
	CNS0095597	Whole white alabastrum(diploid) 4	65.329
	CNS0095598	Silvery flower (diploied) 1	236.326
	CNS0095599	Silvery flower (diploied) 2	181.973
	CNS0095600	Silvery flower (diploied) 3	143.232
	CNS0095601	Golden flower (diploid) 1	96.767
	CNS0095602	Golden flower (diploid) 2	342.467
	CNS0095603	Golden flower (diploid) 3	338.858
	CNS0095604	Slightly white alabastrum(tetraploid) 1	154.490
	CNS0095605	Slightly white alabastrum(tetraploid) 2	140.041
	CNS0095606	Slightly white alabastrum(tetraploid) 3	267.045
	CNS0095607	Whole white alabastrum(tetraploid) 1	91.156
	CNS0095608	Whole white alabastrum(tetraploid) 2	62.429
	CNS0095609	Whole white alabastrum(tetraploid) 3	284.914
	CNS0095610	Silvery flower (tetraploid) 1	141.010
	CNS0095611	Silvery flower (tetraploid) 2	123.365
	CNS0095612	Silvery flower (tetraploid) 3	39.925
	CNS0095613	Golden flower (tetraploid) 1	67.833
	CNS0095614	Golden flower (tetraploid) 2	140.886
	CNS0095615	Golden flower (tetraploid) 3	108.375
CRA001975	CRR073297	Stem 1	77.626
	CRR073298	Stem 2	62.457
	CRR073299	Stem 3	62.401
	CRR073300	Leaf 1	47.593
	CRR073301	Leaf 2	42.930
	CRR073302	Leaf 3	40.977
	CRR073303	Juvenile bud 1	34.382
	CRR073304	Juvenile bud 2	25.939
	CRR073305	Juvenile bud 3	31.290
	CRR073306	Third green 1	12.269
	CRR073307	Third green 2	15.466
	CRR073308	Third green 3	25.313
	CRR073309	Second white 1	10.494
	CRR073310	Second white 2	10.758
	CRR073311	Second white 3	7.706
	CRR073312	Silver flowering 1	39.118
	CRR073313	Silver flowering 2	64.686
	CRR073314	Silver flowering 3	65.342
	CRR073315	Gold flowering 1	10.323
	CRR073316	Gold flowering 2	23.948
	CRR073317	Gold flowering 3	13.241
	CRR073318	Tawny withering 1	32.880
	CRR073319	Tawny withering 2	23.269
	CRR073320	Tawny withering 3	36.021