Gene detail

Detail information of GWHGAAZE013889

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008221243.1	7.2532E-124	PREDICTED: E3 ubiquitin-protein ligase CIP8 [Prunus mume]
Swissprot	tr\|Q9SPL2\|CIP8_ARATH	3E-83	E3 ubiquitin-protein ligase CIP8
trEMBL	tr\|A0A068UGG7\|A0A068UGG7_COFCA	2E-121	Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313\|EMBL:CDP07382.1}
TAIR10	AT5G64920.1	4E-51	COP1-interacting protein 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	2232357	2233412	-
GWHAAZE00000004	mRNA	2232357	2233412	-
GWHAAZE00000004	exon	2232357	2233412	-
GWHAAZE00000004	CDS	2232357	2233412	-

Transcript Sequence
>GWHTAAZE013903 ATGGCCGAAAGCCCGTCGCCGCAAACTCCAACAACACCTGTGCTGGACTCCGATCAGGTCCAGTACTGGTGTTATCAGTGCGAGAAACGCGTCTCCGTCGAGACTCCCTCCGATCTACCCGATGTCATCTGTTACGAGTGCAAAAACGGCTTCGTCGAGTCCATCGCCGTCGCTACTCCTCCTGTCGCCGCTACACCTACCGATCAGATCGATGATTCCTCCTTAAGCAACCAGTTCATCCAAGTCCTTCGTCTCATGGCGCAAGTCGCACATGGCGACGATGACGACACACCGCCTCCACTGCCTTCCGATCATCCAGATCCATCGGACGATGATTATCTCCGGATCGAACTTGATGGATGGGACAACGATGAGGACGAAGAGGTAGAAGCCAGAAACGAAGAGGAACGAGAAGATGAAGGAGTGGATCGTGACGGATCTGAAGATGAAGATGAAGACGAAGACGAGGAAAACGAAAATGGTGGCGGGACAACCGAAGAAGAGCTTCGGAGGAGGCGTAGGGATGTGCTCCGGCTCCGGCTCAGGGACTTCGCGACGCGTGCGGCGAGTCGTCGCAACCGGATTCTGGATTGGGCAGATATATTGATGGGACTGGAGGACCACTCGATCGAGCTGCGATTGCAAGTGCCTGAGATTGATGGATATGTAGGTAATCCGGGGGATTACGTGGATGCGGCTGGATACGAGGCTTTGCTGCAGAATTTGGCGGAGAGCGATGGGAGTGGAAGAAGAGGAGCCCCACCGGCTGCTAAGTCAGCTATATCAGCTTTAGTATCTTATGAATTGAAAGAGGAGGCTTTGGTTTGTGCTGTATGTAAGGATTCGGTGAATGTTGGTGAAATGGCCACGAAATTGCCTTGCGGACATGGATATCACGGAGATTGTATAGTGCCTTGGTTAGGTTCAAGGAATTCTTGCCCTGTATGTCGTTTTGAGTTGCCTACTGATGATCCCGAGTATGAAGAGGAGAGGAAGAAGAGATCAGTGGCCGCTGCTTCTTCTAGTTCCACTGGGCATATTCCTGGTTTGGATTGA

Network for GWHGAAZE013889

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14369.7	zinc_ribbon_9	21	55	2.60E-11
PF13639.7	zf-RING_2	276	317	1.10E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0061630	molecular_function	ubiquitin protein ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	73.938
	SRR3591706	second leaf	49.759
	SRR3591707	mature leaf	63.499
	SRR3591708	Shoot apex	73.176
	SRR3591709	Stem	81.967
	SRR3591710	White floral bud	77.235
	SRR3591711	White flower	57.515
	SRR3591712	Green floral bud	62.672
	SRR3591713	Yellow flower	57.275
SRP173429	SRR8316895	Juvenile bud stage	36.509
	SRR8316896	Juvenile bud stage	56.860
	SRR8316897	Juvenile bud stage	22.527
	SRR8316894	Third green stage	21.558
	SRR8316900	Third green stage	53.550
	SRR8316901	Third green stage	64.960
	SRR8316898	Complete white stage	39.198
	SRR8316899	Complete white stage	110.551
	SRR8316903	Complete white stage	53.049
	SRR8316902	Silver flowering stage	28.653
	SRR8316904	Silver flowering stage	29.343
	SRR8316905	Silver flowering stage	17.374
	SRR8316906	Gold flowering stage	54.953
	SRR8316907	Gold flowering stage	59.258
	SRR8316908	Gold flowering stage	59.467
SRP132670	SRR6706286	Control	87.279
	SRR6706287	Light intensity 50%	86.615
	SRR6706288	Light intensity 20%	77.725
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	59.736
	CNS0095593	Slightly white alabastrum(diploid) 2	59.742
	CNS0095594	Slightly white alabastrum(diploid) 3	54.345
	CNS0095595	Whole white alabastrum(diploid) 2	59.854
	CNS0095596	Whole white alabastrum(diploid) 3	52.409
	CNS0095597	Whole white alabastrum(diploid) 4	53.993
	CNS0095598	Silvery flower (diploied) 1	68.660
	CNS0095599	Silvery flower (diploied) 2	63.616
	CNS0095600	Silvery flower (diploied) 3	77.194
	CNS0095601	Golden flower (diploid) 1	85.402
	CNS0095602	Golden flower (diploid) 2	90.200
	CNS0095603	Golden flower (diploid) 3	92.653
	CNS0095604	Slightly white alabastrum(tetraploid) 1	59.219
	CNS0095605	Slightly white alabastrum(tetraploid) 2	61.602
	CNS0095606	Slightly white alabastrum(tetraploid) 3	82.277
	CNS0095607	Whole white alabastrum(tetraploid) 1	65.109
	CNS0095608	Whole white alabastrum(tetraploid) 2	56.104
	CNS0095609	Whole white alabastrum(tetraploid) 3	63.878
	CNS0095610	Silvery flower (tetraploid) 1	64.886
	CNS0095611	Silvery flower (tetraploid) 2	62.436
	CNS0095612	Silvery flower (tetraploid) 3	71.327
	CNS0095613	Golden flower (tetraploid) 1	61.811
	CNS0095614	Golden flower (tetraploid) 2	68.995
	CNS0095615	Golden flower (tetraploid) 3	76.686
CRA001975	CRR073297	Stem 1	98.443
	CRR073298	Stem 2	108.916
	CRR073299	Stem 3	125.362
	CRR073300	Leaf 1	109.442
	CRR073301	Leaf 2	105.060
	CRR073302	Leaf 3	93.567
	CRR073303	Juvenile bud 1	115.058
	CRR073304	Juvenile bud 2	98.417
	CRR073305	Juvenile bud 3	149.699
	CRR073306	Third green 1	98.135
	CRR073307	Third green 2	88.353
	CRR073308	Third green 3	89.958
	CRR073309	Second white 1	90.994
	CRR073310	Second white 2	57.850
	CRR073311	Second white 3	54.942
	CRR073312	Silver flowering 1	58.746
	CRR073313	Silver flowering 2	64.434
	CRR073314	Silver flowering 3	52.407
	CRR073315	Gold flowering 1	110.886
	CRR073316	Gold flowering 2	136.002
	CRR073317	Gold flowering 3	160.206
	CRR073318	Tawny withering 1	112.746
	CRR073319	Tawny withering 2	82.059
	CRR073320	Tawny withering 3	94.060