Detail information of GWHGAAZE013849


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006473736.10PREDICTED: probable alpha-amylase 2-like [Citrus sinensis]
Swissprottr|Q8LFG1|AMY2_ARATH0Probable alpha-amylase 2
trEMBLtr|A0A067HB02|A0A067HB02_CITSI0Alpha-amylase {ECO:0000256|RuleBase:RU361134}
TAIR10AT1G76130.10alpha-amylase-like 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene15747811590916-
GWHAAZE00000004mRNA15747811590916-
GWHAAZE00000004exon15908061590916-
GWHAAZE00000004exon15902291590379-
GWHAAZE00000004exon15884371588498-
GWHAAZE00000004exon15874851587518-
GWHAAZE00000004exon15871131587150-
GWHAAZE00000004exon15866951586821-
GWHAAZE00000004exon15863901586616-
GWHAAZE00000004exon15786401578785-
GWHAAZE00000004exon15784321578544-
GWHAAZE00000004exon15780441578132-
GWHAAZE00000004exon15768781577000-
GWHAAZE00000004exon15755531575588-
GWHAAZE00000004exon15750481575146-
GWHAAZE00000004exon15747811574972-
GWHAAZE00000004CDS15908061590916-
GWHAAZE00000004CDS15902291590379-
GWHAAZE00000004CDS15884371588498-
GWHAAZE00000004CDS15874851587518-
GWHAAZE00000004CDS15871131587150-
GWHAAZE00000004CDS15866951586821-
GWHAAZE00000004CDS15863901586616-
GWHAAZE00000004CDS15786401578785-
GWHAAZE00000004CDS15784321578544-
GWHAAZE00000004CDS15780441578132-
GWHAAZE00000004CDS15768781577000-
GWHAAZE00000004CDS15755531575588-
GWHAAZE00000004CDS15750481575146-
GWHAAZE00000004CDS15747811574972-
Transcript Sequence

Network for GWHGAAZE013849

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00128.25Alpha-amylase1502162.60E-07
PF07821.13Alpha-amyl_C24585148.90E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01176AMY, amyA, malS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500
Pancreatic secretionmap04972
Carbohydrate digestion and absorptionmap04973

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0004556molecular_functionalpha-amylase activity
GO:0005509molecular_functioncalcium ion binding
GO:0003824molecular_functioncatalytic activity
GO:0043169molecular_functioncation binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf31.072
SRR3591706second leaf11.688
SRR3591707mature leaf10.331
SRR3591708Shoot apex19.978
SRR3591709Stem26.896
SRR3591710White floral bud21.908
SRR3591711White flower28.354
SRR3591712Green floral bud22.773
SRR3591713Yellow flower30.396
SRP173429 SRR8316895Juvenile bud stage 17.158
SRR8316896Juvenile bud stage 18.367
SRR8316897Juvenile bud stage 7.861
SRR8316894Third green stage 9.039
SRR8316900Third green stage 27.617
SRR8316901Third green stage 22.674
SRR8316898Complete white stage 15.140
SRR8316899Complete white stage 39.140
SRR8316903Complete white stage 18.971
SRR8316902Silver flowering stage11.002
SRR8316904Silver flowering stage15.279
SRR8316905Silver flowering stage6.290
SRR8316906Gold flowering stage 27.318
SRR8316907Gold flowering stage 23.073
SRR8316908Gold flowering stage 28.660
SRP132670SRR6706286Control25.846
SRR6706287Light intensity 50%28.661
SRR6706288Light intensity 20%28.887
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.197
CNS0095593Slightly white alabastrum(diploid) 224.447
CNS0095594Slightly white alabastrum(diploid) 320.662
CNS0095595Whole white alabastrum(diploid) 219.078
CNS0095596Whole white alabastrum(diploid) 319.351
CNS0095597Whole white alabastrum(diploid) 416.774
CNS0095598Silvery flower (diploied) 124.681
CNS0095599Silvery flower (diploied) 225.155
CNS0095600Silvery flower (diploied) 334.638
CNS0095601Golden flower (diploid) 118.980
CNS0095602Golden flower (diploid) 229.995
CNS0095603Golden flower (diploid) 329.820
CNS0095604Slightly white alabastrum(tetraploid) 117.193
CNS0095605Slightly white alabastrum(tetraploid) 215.625
CNS0095606Slightly white alabastrum(tetraploid) 328.046
CNS0095607Whole white alabastrum(tetraploid) 110.351
CNS0095608Whole white alabastrum(tetraploid) 28.923
CNS0095609Whole white alabastrum(tetraploid) 322.836
CNS0095610Silvery flower (tetraploid) 133.232
CNS0095611Silvery flower (tetraploid) 233.740
CNS0095612Silvery flower (tetraploid) 329.613
CNS0095613Golden flower (tetraploid) 125.243
CNS0095614Golden flower (tetraploid) 229.912
CNS0095615Golden flower (tetraploid) 329.583
CRA001975CRR073297Stem 116.400
CRR073298Stem 215.137
CRR073299Stem 315.068
CRR073300Leaf 118.342
CRR073301Leaf 220.589
CRR073302Leaf 317.439
CRR073303Juvenile bud 123.342
CRR073304Juvenile bud 218.770
CRR073305Juvenile bud 323.729
CRR073306Third green 112.092
CRR073307Third green 211.040
CRR073308Third green 311.498
CRR073309Second white 115.985
CRR073310Second white 214.482
CRR073311Second white 315.036
CRR073312Silver flowering 110.873
CRR073313Silver flowering 212.620
CRR073314Silver flowering 39.905
CRR073315Gold flowering 19.560
CRR073316Gold flowering 212.354
CRR073317Gold flowering 37.605
CRR073318Tawny withering 118.872
CRR073319Tawny withering 221.652
CRR073320Tawny withering 319.564