Gene detail

Detail information of GWHGAAZE013840

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002284820.1	PREDICTED: neutral ceramidase-like isoform X1 [Vitis vinifera]
Swissprot	tr\|Q304B9\|NCASE_ARATH	Neutral ceramidase (Precursor)
trEMBL	tr\|E0CQT1\|E0CQT1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI18885.3}
TAIR10	AT2G38010.1	Neutral/alkaline non-lysosomal ceramidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	1430321	1433337	+
GWHAAZE00000004	mRNA	1430321	1433337	+
GWHAAZE00000004	exon	1430321	1430619	+
GWHAAZE00000004	exon	1430707	1430915	+
GWHAAZE00000004	exon	1431007	1431312	+
GWHAAZE00000004	exon	1431431	1431680	+
GWHAAZE00000004	exon	1431772	1432030	+
GWHAAZE00000004	exon	1432131	1432256	+
GWHAAZE00000004	exon	1432351	1432414	+
GWHAAZE00000004	exon	1432529	1432698	+
GWHAAZE00000004	exon	1432783	1433337	+
GWHAAZE00000004	CDS	1430321	1430619	+
GWHAAZE00000004	CDS	1430707	1430915	+
GWHAAZE00000004	CDS	1431007	1431312	+
GWHAAZE00000004	CDS	1431431	1431680	+
GWHAAZE00000004	CDS	1431772	1432030	+
GWHAAZE00000004	CDS	1432131	1432256	+
GWHAAZE00000004	CDS	1432351	1432414	+
GWHAAZE00000004	CDS	1432529	1432698	+
GWHAAZE00000004	CDS	1432783	1433337	+

Transcript Sequence
>GWHTAAZE013854 ATGTACCCAAAAACATCTGTTTCTTTTCTTTTCATTTGTGCTGTACTAATCCTGGGTGCTAATGGAGAATACTTGATTGGAGTGGGGAGCTATGACATGACCGGTCCGGCTGCCGGAGTGAACATGATGGGTTATGCTAGCATGGAACAGGTGACGGCCGGTATACATTTCCGGCTAAGATCAAGAGCGTTCATTATAGCCGAAAGCTCAGACCGTGCAAGGTTTGCTTTCGTCAACCTCGATGCTGGAATGGCTTCACAGCTTGTCACTATCAAAGTGCTTGAAAGACTACAGAAAAGGTATGGGAATTTGTATAATAAAGATAACGTAGCAATCAGTGGCACCCATACTCATGCCGGTCCAGCGGGTTATTTGCAGTATTTGATCTACTCAATAACCTCTCTCGGCTTTATCCCACAGTCATTTGATGCCATTGTCACTGCCATCGAGATGAGCATTGCTCAAGCTCATGATAATCTCAATCCCGGCTCCATTTTCCTCAACAAGGGGGATGTGGAGAATGGAGGGATAAATAGGAGTCCAAGTGCGTATTTACTCAATCCTCCAGAGGAAAGAGCCAAATATGCACGCGATGTTGATACCCTAATGACACTTTTGAAGTTTGTGGACGGTTCAAGTGGGAAGAGCATTGGAGCATTTAGCTGGTTCGCAACACATGGAACCTCTATGAGCAAAAACAACAAGCTTATAAGTGGAGACAATAAGGGTGCTGCTGCTAGGTTCTTTGAGGACTGGTTCATTTCCGCTTCCAAAAATGCCTCCTCACAAATCAATAGCCCTTCTACTTCGTCAAGTAAAAGTGCTTTGTTAAAGAAAGCACTGAAAATCAAAGCCACAGGAGGACAACCTTGCAGTAAAACAACCAGCCAAGGCTCTAAGGTAAGGAACAACAACCAATTTGTGGGAGCATTTTGCCAGTCAAATGTAGGAGATGTTACCCCAAATGTACTAGGAGCATTTTGCACTGACACTGGATTGCCTTGTGATTTCAATCGCTCCTCGTGCCATGGAAATGACCTCCTTTGTGTGGGGCGTGGACCCGGGTATCCGGATGAAGTATTGAGCACAAAGATTATAGGAGATAGGCAGTTCCAAAAAGCTGTAGATCTATTCACATCTGCTAAGGAAGAATTAACTGGGAAAATCGACCACCGCCAGGTATATCTGAATTTTACAAATATTGAGGTGGAGTTAGGGGGAAACAAGGTGGTCAGAACATGTCCGGCAGCCCTTGGTCCAGGTTTTGCGGCTGGAACTACGGATGGACCTGGTGTTTTTGGTTTCCAACAAGGGGATACAGAGATCAATAAGTTGTGGAAACAACTAAGAGATGCATTGAAAAAACCAAGCCAATACCAAATAGACTGTCAACAGCCCAAGGCTGTTCTGCTCAGCTCAGGCGAAATGTTTGAACCATATGCTTGGGCGCCAGCAATTCTTCCTATTCAAATACTCAGGGTGGGACAACTGGTCATATTGTCTGTCCCAGGAGAATTCACAACAATGGCTGGCCGGAGACTAAGGGAAGCAGTCAAGGAGACACTGATAAGCAATGGGAATGGGGAATTTAATGAGGATACCCACATTGTAATAGCAGGGTTAACAAACACGTACTCACAGTACATTTCCACTTTCGAGGAATATAAGCAACAACGCTATGAGGCTGCTTCAACACTCTATGGTCCTTATACGTTATCAGCGTATATCCAAGAATTCAATAAATTGGCGAAAGCAATGGCGAAAGGGGAAAAGATCGTTACAAAAAGTCCATCGCCACCAGATCTCTCCTCTGTCCAACTCAAGCTCGTGGTGGACCCTCTCGGTGACTCACCTCCACCAGGGGTAAACTTTGGTGACATTAAACAAGACATCACCATACCTAAAAGTGGGTCATTTAAGAAGGGGGATAGACCAAGCGCCACATTTTGGAGTCCAACCCCGAGATACGACCTATTGACAGAAGGCACGTATGCAGTGGCAGAAATGCTTCAAGGGGAACGGTGGGTTTCATCCTATGACGATGATGATTTCTGCTTGTACTTTAAGTGGAAATTAGATAATAGTAGCTTTAATGGATTCGCAACCATTGAATGGGAAGTGCCACAGGAAGCTAGCTCTGGAGTATACCGGTTAAGGCACTTTGGATCATCAAAGAAAACAATAAATTCCCCTACAGAATACTTTACCGGTGCATCTAGTGCATTTACAGTGTCTTAA

Network for GWHGAAZE013840

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04734.14	Ceramidase_alk	24	577	1.20E-223
PF17048.6	Ceramidse_alk_C	579	744	1.20E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12349	ASAH2	Metabolic pathways	map01100
		Sphingolipid metabolism	map00600
		Sphingolipid signaling pathway	map04071

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.170
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.104
	SRR3591708	Shoot apex	0.356
	SRR3591709	Stem	0.317
	SRR3591710	White floral bud	0.550
	SRR3591711	White flower	0.773
	SRR3591712	Green floral bud	1.023
	SRR3591713	Yellow flower	0.367
SRP173429	SRR8316895	Juvenile bud stage	4.024
	SRR8316896	Juvenile bud stage	5.275
	SRR8316897	Juvenile bud stage	2.827
	SRR8316894	Third green stage	0.773
	SRR8316900	Third green stage	1.340
	SRR8316901	Third green stage	1.235
	SRR8316898	Complete white stage	0.243
	SRR8316899	Complete white stage	0.465
	SRR8316903	Complete white stage	0.166
	SRR8316902	Silver flowering stage	0.178
	SRR8316904	Silver flowering stage	0.348
	SRR8316905	Silver flowering stage	0.038
	SRR8316906	Gold flowering stage	0.333
	SRR8316907	Gold flowering stage	0.070
	SRR8316908	Gold flowering stage	0.282
SRP132670	SRR6706286	Control	1.429
	SRR6706287	Light intensity 50%	1.834
	SRR6706288	Light intensity 20%	1.838
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.486
	CNS0095593	Slightly white alabastrum(diploid) 2	0.259
	CNS0095594	Slightly white alabastrum(diploid) 3	1.405
	CNS0095595	Whole white alabastrum(diploid) 2	0.127
	CNS0095596	Whole white alabastrum(diploid) 3	0.019
	CNS0095597	Whole white alabastrum(diploid) 4	0.148
	CNS0095598	Silvery flower (diploied) 1	0.099
	CNS0095599	Silvery flower (diploied) 2	0.197
	CNS0095600	Silvery flower (diploied) 3	0.205
	CNS0095601	Golden flower (diploid) 1	0.229
	CNS0095602	Golden flower (diploid) 2	0.080
	CNS0095603	Golden flower (diploid) 3	0.128
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.389
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.107
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.182
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.094
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.357
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.941
	CNS0095610	Silvery flower (tetraploid) 1	0.674
	CNS0095611	Silvery flower (tetraploid) 2	0.540
	CNS0095612	Silvery flower (tetraploid) 3	0.301
	CNS0095613	Golden flower (tetraploid) 1	0.094
	CNS0095614	Golden flower (tetraploid) 2	0.406
	CNS0095615	Golden flower (tetraploid) 3	0.077
CRA001975	CRR073297	Stem 1	5.295
	CRR073298	Stem 2	2.715
	CRR073299	Stem 3	0.704
	CRR073300	Leaf 1	0.444
	CRR073301	Leaf 2	0.253
	CRR073302	Leaf 3	0.066
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.062
	CRR073305	Juvenile bud 3	0.160
	CRR073306	Third green 1	0.111
	CRR073307	Third green 2	0.019
	CRR073308	Third green 3	0.190
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.001
	CRR073311	Second white 3	0.051
	CRR073312	Silver flowering 1	0.037
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.001
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.148
	CRR073317	Gold flowering 3	0.032
	CRR073318	Tawny withering 1	0.095
	CRR073319	Tawny withering 2	0.213
	CRR073320	Tawny withering 3	0.059