Gene detail

Detail information of GWHGAAZE013836

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011099557.1	PREDICTED: 4-coumarate--CoA ligase-like 5 [Sesamum indicum]
Swissprot	tr\|Q84P21\|4CLL5_ARATH	4-coumarate--CoA ligase-like 5
trEMBL	tr\|A0A022PTG6\|A0A022PTG6_ERYGU	Uncharacterized protein {ECO:0000313\|EMBL:EYU17530.1}
TAIR10	AT1G20510.1	OPC-8:0 CoA ligase1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	1350747	1354779	+
GWHAAZE00000004	mRNA	1350747	1354779	+
GWHAAZE00000004	exon	1350747	1352001	+
GWHAAZE00000004	exon	1354009	1354154	+
GWHAAZE00000004	exon	1354267	1354334	+
GWHAAZE00000004	exon	1354464	1354566	+
GWHAAZE00000004	exon	1354666	1354779	+
GWHAAZE00000004	CDS	1350747	1352001	+
GWHAAZE00000004	CDS	1354009	1354154	+
GWHAAZE00000004	CDS	1354267	1354334	+
GWHAAZE00000004	CDS	1354464	1354566	+
GWHAAZE00000004	CDS	1354666	1354779	+

Transcript Sequence
>GWHTAAZE013850 ATGGCGCAAAATAGCAGCAACTCCACTACTACTACTACTAGTACTACCATAGACCCAAGAAGTGGCTTCTGTAAATCCAACTCCGTCTTCTACAGCAAACGCAAACCCATAGCTTTGTCATCAAATCACTCCCAAGATGTCACCACTTTCATCTCCTCACGTGCCCACAACGGCAAGACCGCCTTCATCGACGCTGCCACAGGCCGCCAACTTTCCTTCTCTGACGTATGGTCAGCCGTCGATTCCGTTGCCACCTCCCTCTCCGACATGGGGATTCGAAAGGGACACGTCATCCTCCTCCTCTCACCCAATTCCATCTTCTTCCCTGTAATTTGCCTATCTGTCATGTCCCTCGGCGCCATCATTACCACCACTAATCCCCTCAACACCAATCGTGAAATCGCCAAGCAAATCGCCGATTCCAAGCCCGTCCTCGCCTTCACCGTCCCCCAACTCGTTCCCAAACTCGACGGATCCAATCTTCCCATCGTACTTATCGCCCACGGCCACCCCCACCCCCCCAATATCACTTCCAACTCCAAAATTGTGACCACATTAGAGACAATGATGAACAAGGAACCGAGTCAGAGCCGAGTCAAGGACAGAGTGACTCAGGACGACACGGCTACTCTCCTTTACTCGTCCGGTACCACTGGTGCCAGCAAAGGCGTGGTATCGTCGCATCGGAACCTGATGGCGATGGTCCAGACAATTGTAAGTCGGTTTCGTTTAGAAGCGGGAGAGCAAACTTTCATCTGCACCGTCCCTATGTTTCACATCTACGGTTTAGCAGCTTTCGCTGCGGGGCTGCTAGCATCTGGATCGACGGTAGTTGTTCTTTCAAAGTTCGAGATGGACGAAATGCTATCGGCGATCGGTAAGTACAGAGCTACCTACCTCCCGCTGGTGCCTCCAATACTCGTTGCTTTGGTGAACCACGCGGATGGGATAAAGCGAAAGTACGATTTGGGGACGTTGAACTCGGTGTTGTCGGGAGGAGCGCCGCTGAGTAAGGAGGTGATAGAGGGATTCGCGGACAAGTATCCGGGAGTGACAATACTGCAGGGGTATGGATTAACGGAAACCACGGGTATTGGGGCGTCGACGGACTCGGCGGAGGAGAGTCAGAGATATGGGACGGCCGGGATGTTGTCGCCCAGCATGGAGGCCAAGATCGTTGATCCGGAGAGCGGCGAAGCGTTGGCGGTAAATCAGACGGGCGAGCTTTGGCTTAGAGGACCCACCGTTATGAAAGGTTATTTCAGTAACGAAGAAGCTACTGCATCAACTCTAGATTCAGATGGCTGGTTGAGAACCGGAGATCTCTGCTACATTGATGATGATGGTTTCATTTTTGTGGTGGATAGATTAAAGGAGTTGATCAAATACAAGGGATATCAGGTTCCTCCCGCTGAGCTAGAGGCTTTGTTACTCACTCACCCAGAGATTTCTGATGCTGCTGTTATTCCATTCCCGGATAAGGATGTTGGGCAGTATCCCATGGCATATGTAGTACGTAAAACTGGAAGCAATGTGTCCGAAAATGCAATCATGGACTTTATTGCAAAACTGGTGGCTCCATACAAGAGAATAAGGCGAGTGGCATTTGTAGCTTCCGTCCCCAAGAATCCATCAGGGAAGATCCTCAGGAAGGATCTGATAAAACTTGCAACCTCCAAACTTTAA

Network for GWHGAAZE013836

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00501.29	AMP-binding	54	463	7.10E-101
PF13193.7	AMP-binding_C	472	547	9.80E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10526	OPCL1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	51.887
	SRR3591706	second leaf	63.362
	SRR3591707	mature leaf	53.588
	SRR3591708	Shoot apex	31.356
	SRR3591709	Stem	35.023
	SRR3591710	White floral bud	67.990
	SRR3591711	White flower	20.043
	SRR3591712	Green floral bud	81.319
	SRR3591713	Yellow flower	7.370
SRP173429	SRR8316895	Juvenile bud stage	37.768
	SRR8316896	Juvenile bud stage	19.636
	SRR8316897	Juvenile bud stage	28.386
	SRR8316894	Third green stage	7.663
	SRR8316900	Third green stage	31.689
	SRR8316901	Third green stage	37.258
	SRR8316898	Complete white stage	6.987
	SRR8316899	Complete white stage	135.789
	SRR8316903	Complete white stage	21.762
	SRR8316902	Silver flowering stage	2.690
	SRR8316904	Silver flowering stage	4.429
	SRR8316905	Silver flowering stage	2.431
	SRR8316906	Gold flowering stage	5.871
	SRR8316907	Gold flowering stage	2.604
	SRR8316908	Gold flowering stage	7.850
SRP132670	SRR6706286	Control	34.647
	SRR6706287	Light intensity 50%	36.523
	SRR6706288	Light intensity 20%	38.071
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.669
	CNS0095593	Slightly white alabastrum(diploid) 2	33.316
	CNS0095594	Slightly white alabastrum(diploid) 3	38.656
	CNS0095595	Whole white alabastrum(diploid) 2	36.113
	CNS0095596	Whole white alabastrum(diploid) 3	13.848
	CNS0095597	Whole white alabastrum(diploid) 4	34.539
	CNS0095598	Silvery flower (diploied) 1	60.225
	CNS0095599	Silvery flower (diploied) 2	70.098
	CNS0095600	Silvery flower (diploied) 3	24.527
	CNS0095601	Golden flower (diploid) 1	54.249
	CNS0095602	Golden flower (diploid) 2	48.391
	CNS0095603	Golden flower (diploid) 3	47.560
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.837
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.683
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.230
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.955
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.361
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.292
	CNS0095610	Silvery flower (tetraploid) 1	4.683
	CNS0095611	Silvery flower (tetraploid) 2	9.067
	CNS0095612	Silvery flower (tetraploid) 3	6.004
	CNS0095613	Golden flower (tetraploid) 1	2.157
	CNS0095614	Golden flower (tetraploid) 2	6.749
	CNS0095615	Golden flower (tetraploid) 3	1.174
CRA001975	CRR073297	Stem 1	40.986
	CRR073298	Stem 2	39.774
	CRR073299	Stem 3	45.078
	CRR073300	Leaf 1	38.208
	CRR073301	Leaf 2	30.904
	CRR073302	Leaf 3	36.618
	CRR073303	Juvenile bud 1	36.947
	CRR073304	Juvenile bud 2	31.260
	CRR073305	Juvenile bud 3	67.692
	CRR073306	Third green 1	2.043
	CRR073307	Third green 2	2.408
	CRR073308	Third green 3	2.702
	CRR073309	Second white 1	0.684
	CRR073310	Second white 2	1.084
	CRR073311	Second white 3	0.854
	CRR073312	Silver flowering 1	1.933
	CRR073313	Silver flowering 2	4.629
	CRR073314	Silver flowering 3	3.647
	CRR073315	Gold flowering 1	43.055
	CRR073316	Gold flowering 2	102.435
	CRR073317	Gold flowering 3	99.633
	CRR073318	Tawny withering 1	63.569
	CRR073319	Tawny withering 2	178.449
	CRR073320	Tawny withering 3	42.030