Gene detail

Detail information of GWHGAAZE013777

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002273784.1	PREDICTED: squamosa promoter-binding-like protein 14 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q8RY95\|SPL14_ARATH	Squamosa promoter-binding-like protein 14
trEMBL	tr\|F6I6X1\|F6I6X1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62689.1}
TAIR10	AT1G20980.1	squamosa promoter binding protein-like 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	301608	307234	-
GWHAAZE00000004	mRNA	301608	307234	-
GWHAAZE00000004	exon	301608	302027	-
GWHAAZE00000004	exon	303429	304025	-
GWHAAZE00000004	exon	304132	304276	-
GWHAAZE00000004	exon	304379	304514	-
GWHAAZE00000004	exon	304718	304835	-
GWHAAZE00000004	exon	304913	305020	-
GWHAAZE00000004	exon	305110	305184	-
GWHAAZE00000004	exon	305326	306158	-
GWHAAZE00000004	exon	306243	306439	-
GWHAAZE00000004	exon	306672	307234	-
GWHAAZE00000004	CDS	306672	307234	-
GWHAAZE00000004	CDS	306243	306439	-
GWHAAZE00000004	CDS	305326	306158	-
GWHAAZE00000004	CDS	305110	305184	-
GWHAAZE00000004	CDS	304913	305020	-
GWHAAZE00000004	CDS	304718	304835	-
GWHAAZE00000004	CDS	304379	304514	-
GWHAAZE00000004	CDS	304132	304276	-
GWHAAZE00000004	CDS	303429	304025	-
GWHAAZE00000004	CDS	301608	302027	-

Transcript Sequence
>GWHTAAZE013791 ATGTCCTCGTCTTCATCGAGGAAAAGAACAGGGACGAATTTTCAACAGCAACTCAGCTTCACTGAGTCTGAGTTTCAGAAACCTAGGGACAGTTGGAACCCTAAGTTCTGGGATTGGGACAGCTCGAGGTTTGTGGCCACACCATCTGAATCAGATGTACGTCTTGGAATTAGTGCTGCTGCTGCCGTCGCCTCCTCTGTCCAGTTGGAACCGCAAAGAAGAAGAAACAGGTGCGAAGAAGAAAGTAGCCTACCGTCAAAATCAAATCATCGCGGTGTTGGTGTAGGGGAAGATGATGGAAGCCTCCTGAGGCTAAAGCTTGGCAGAGGGGACTTGTTGAATCCTATTGAGGAGGAGGAAGAGTCAGCAAGGGCAAGGCCCAACAAGAAAGTCCGATCTGGATCTCCTGGCAACTATCCCATGTGTCAGGTCGATAACTGCAAAGAAGATCTCTCCAATGCCAAAGACTATCATAGGCGCCACAAAGTATGTGACCTTCATAGTAAAGCAACTCAGGCCTTAGTCAGCAAGCAGTTGCAAAGGTTCTGTCAGCAGTGCAGCAGGTTTCACCCTCTTTCGGAGTTTGATGAGGGCAAGAGAAGTTGTAGGCGAAGACTTGCTGGTCACAACAGGCGAAGGAGGAAATCTCAGCCAGAGGATGCTCCTCCACGGTTGCTACTCCCTGGAAACCGTGATAATAATACTGCCGGTGGAGACATGGATATTGTGAATTTACTCACAGTTTTAGCACATGCACAAGGAAGCAAAGAGGACAGGAACACTACTTGCGCATCAGCACCGAATAAGGATCAGCTCATTCAGATTCTTAATAAAATAAATTCATTACCTTTGCCAGTGGATTTGACAGCAAAGTTACCAACTTCAGGAGGTTTAAATGGAAGTGTTCGAGGCCAACTATTTTCAGAAAATCAACCCATGTTGAATGGGAACCATTCTTCTGCATCAACTATGGATTTGCTTGCCGTGCTTTCGACGACTCTGGCAGCACCAGCTCCTGATGCCCTTCCGATCATGCCCCAAGGACATGACATTAGGGAAACTAAGTTAACAGGTGGTCTCGAGCGAACTACATGTCTCGATTTGCAGAAGGTATCAGATAGACAGTTACCTTCAGCTGGAGATAGAAGTGGTACCAGTTACCAGTCTCCTGTTGGAGATTTGGATTGCCGAGTCCAAGAAAATCGTGCGAATTTACCTCTACAGCTCTTTAGTTCATCACCTGAAAATGACAGCCGACCCAAACTAGCATCTGGCAGGAAATATTTCTCTTCTGATAGTAGTAACTCTATGGAAGAGAGGTCGCCTTCATCTTCTCCACCCATTGCGCAGACATTGTTCCCAATGCAGACCTCAAGAGAAACAGTGAAGCCTGAGAGTATGTCAACCAGTGGGGAGGTTACTACAAATGTTGAAGCTAGTAGGATTCGTGGTGGTGTTATGTCTCTTGAGCTTTTTGGAGGATCAAATAGAGGAGCTAGCAATGCTAAATTTCAAAGTTATCCATACCAAGCTGGGTATACATCTTCGTCAGGGTCCGATAATTCACATTCGAGTTTAAATTCTGATGCTCAGGATCGTACTGGACGAATAATTTTCAAACTATTCGACAAGGATCCCAGTCATTTACCAGGGACATTGAGGACAGAGATTTACAATTGGCTTTCTCGCAGTCCATCAGAGATGGAAAGCTATATAAGGCCTGGTTGTGTTGTTCTGTCAGTTTACATATCAATGTCCTCTTCTGTTTGGGAGCAACTTGAAGTTAATCTTTGTCAGTATGTCAATTCTTTGGTTCAAGATTCTGGTACTAAGTTTTGGAGAAACGGAAGGTTTTTAGTTCATATAGGCAGGCAGTTAGCAGTGCATAAAGCTGGAAAGGTTCATCTGTTCAAATCCTGGAAAGCCTGCAGTTCCCCAGAATTAATCTCTGTCTCCCCTTTGGCAGTTGTTGGTGGGCAAGAAACCTCTCTTTTACTAAGGGGGAGAAATTTGAGAACTACTGGCACCAAGATCCACTGCACACATACCAGTGGGTACAAACTACAGGAGCTTTCTAGATCAGCCTCTCAGGAAAATATATATGATGAGATAAGTTTGAGCTGCTTTACAATTCATGGCGCAGCTTCTAGTGCATTGGGTCGCTGTTTCATTGAGGTTGAAAATGGTTTCAGAGGCACCAGTTTCCCTGTAATAATAGCTGATGCTGCCATTTGCCAAGAATTGAGATTCCTCGAGTCAGAATTCAATGAAGGTGCGAAAGTGCATGATGCACGGGACCAGATTCCTGATGTTGGGCAGTGTCAGTCAAGAGATGAAGTCCTGCACTTTCTAAACGATCTTGGATGGCTGTTCCAAAGGAAGGGTATCTCTTCCTTGCTTGAGGCTCCTTATTTTATGCTCAACCGGTTTAAGTTTCTATTTATATTCTCTGTTGAAAGGGATTTCTGTTCTTTAGTCAAAACTCTCCTAGACATTCTACTTAAAAGAAATGTCGTTAAGGATGAGTGGTTGATGGAGTCCCTGGAGATGCTTCGGGAGATTCATATTTTGAACAGGGCAGTTAAAAGGAGATGTAAGAAGATGGTTGACATGCTCATACGCTATTCCATACCGTGCACTACTGATACCTCTCAACAATACATCTTCCCCCCAAATCTTGGTGGACCTGGTGGTATTACCCCACTACATTTGGCTGCTTGCACTCCATGTTCAGATGATATGGTTGATGTACTGACAAGTGACCCCCTGGAGATTGGATTGGTGTCATGGAATTCTGTTCTTGATGCAAATGGGCTGTCTCCGTATGTGCATGCCTTAATGAGGAATAATCACTCTTATAACAATCTTGTTGCTCGGAAGCTTGTTGGTCAAGTCTCTGTATCAATTGGAGGTGAGATAGAGCAACAACAATCATTGACAGAGGACCAAGGTCACAGGCCTCGCTCGCAATTCAAGGAAGGACAAAAAACTTGTTCAACGTGTGCAGTTGTGGCGGGTAGGTACCACACTAGAATTCCAGGTTCACAAGGGTTGCTTCACCGTCCCTACATACACTCTATGCTTGCCATTGCTGCTGTCTGTGTGTGTGTATGCCTCTTCTTGAGAGGATCTCCAGACATTGGGTTAGTTGCTCCCTTCAAGTGGGAGAATCTAGATTATGGCCCAAGTTAG

Network for GWHGAAZE013777

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	142	215	2.50E-29

Protein Sequence

>GWHPAAZE013784
MSSSSSRKRTGTNFQQQLSFTESEFQKPRDSWNPKFWDWDSSRFVATPSESDVRLGISAAAAVASSVQLEPQRRRNRCEEESSLPSKSNHRGVGVGEDDGSLLRLKLGRGDLLNPIEEEEESARARPNKKVRSGSPGNYPMCQVDNCKEDLSNAKDYHRRHKVCDLHSKATQALVSKQLQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKSQPEDAPPRLLLPGNRDNNTAGGDMDIVNLLTVLAHAQGSKEDRNTTCASAPNKDQLIQILNKINSLPLPVDLTAKLPTSGGLNGSVRGQLFSENQPMLNGNHSSASTMDLLAVLSTTLAAPAPDALPIMPQGHDIRETKLTGGLERTTCLDLQKVSDRQLPSAGDRSGTSYQSPVGDLDCRVQENRANLPLQLFSSSPENDSRPKLASGRKYFSSDSSNSMEERSPSSSPPIAQTLFPMQTSRETVKPESMSTSGEVTTNVEASRIRGGVMSLELFGGSNRGASNAKFQSYPYQAGYTSSSGSDNSHSSLNSDAQDRTGRIIFKLFDKDPSHLPGTLRTEIYNWLSRSPSEMESYIRPGCVVLSVYISMSSSVWEQLEVNLCQYVNSLVQDSGTKFWRNGRFLVHIGRQLAVHKAGKVHLFKSWKACSSPELISVSPLAVVGGQETSLLLRGRNLRTTGTKIHCTHTSGYKLQELSRSASQENIYDEISLSCFTIHGAASSALGRCFIEVENGFRGTSFPVIIADAAICQELRFLESEFNEGAKVHDARDQIPDVGQCQSRDEVLHFLNDLGWLFQRKGISSLLEAPYFMLNRFKFLFIFSVERDFCSLVKTLLDILLKRNVVKDEWLMESLEMLREIHILNRAVKRRCKKMVDMLIRYSIPCTTDTSQQYIFPPNLGGPGGITPLHLAACTPCSDDMVDVLTSDPLEIGLVSWNSVLDANGLSPYVHALMRNNHSYNNLVARKLVGQVSVSIGGEIEQQQSLTEDQGHRPRSQFKEGQKTCSTCAVVAGRYHTRIPGSQGLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDYGPS

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.964
	SRR3591706	second leaf	17.780
	SRR3591707	mature leaf	27.799
	SRR3591708	Shoot apex	20.294
	SRR3591709	Stem	31.105
	SRR3591710	White floral bud	41.275
	SRR3591711	White flower	56.094
	SRR3591712	Green floral bud	25.863
	SRR3591713	Yellow flower	50.984
SRP173429	SRR8316895	Juvenile bud stage	9.006
	SRR8316896	Juvenile bud stage	11.505
	SRR8316897	Juvenile bud stage	6.374
	SRR8316894	Third green stage	7.355
	SRR8316900	Third green stage	13.801
	SRR8316901	Third green stage	14.776
	SRR8316898	Complete white stage	8.780
	SRR8316899	Complete white stage	21.879
	SRR8316903	Complete white stage	19.943
	SRR8316902	Silver flowering stage	11.765
	SRR8316904	Silver flowering stage	19.408
	SRR8316905	Silver flowering stage	8.093
	SRR8316906	Gold flowering stage	29.150
	SRR8316907	Gold flowering stage	25.024
	SRR8316908	Gold flowering stage	38.346
SRP132670	SRR6706286	Control	13.794
	SRR6706287	Light intensity 50%	14.922
	SRR6706288	Light intensity 20%	15.654
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.507
	CNS0095593	Slightly white alabastrum(diploid) 2	6.320
	CNS0095594	Slightly white alabastrum(diploid) 3	5.816
	CNS0095595	Whole white alabastrum(diploid) 2	6.478
	CNS0095596	Whole white alabastrum(diploid) 3	4.135
	CNS0095597	Whole white alabastrum(diploid) 4	5.097
	CNS0095598	Silvery flower (diploied) 1	14.332
	CNS0095599	Silvery flower (diploied) 2	10.002
	CNS0095600	Silvery flower (diploied) 3	27.685
	CNS0095601	Golden flower (diploid) 1	8.919
	CNS0095602	Golden flower (diploid) 2	30.365
	CNS0095603	Golden flower (diploid) 3	28.454
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.421
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.909
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.623
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.500
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.218
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.712
	CNS0095610	Silvery flower (tetraploid) 1	34.840
	CNS0095611	Silvery flower (tetraploid) 2	29.375
	CNS0095612	Silvery flower (tetraploid) 3	35.727
	CNS0095613	Golden flower (tetraploid) 1	17.464
	CNS0095614	Golden flower (tetraploid) 2	33.096
	CNS0095615	Golden flower (tetraploid) 3	53.067
CRA001975	CRR073297	Stem 1	19.724
	CRR073298	Stem 2	19.109
	CRR073299	Stem 3	12.493
	CRR073300	Leaf 1	19.677
	CRR073301	Leaf 2	16.605
	CRR073302	Leaf 3	12.832
	CRR073303	Juvenile bud 1	12.417
	CRR073304	Juvenile bud 2	14.012
	CRR073305	Juvenile bud 3	20.980
	CRR073306	Third green 1	15.589
	CRR073307	Third green 2	9.520
	CRR073308	Third green 3	17.650
	CRR073309	Second white 1	12.711
	CRR073310	Second white 2	19.475
	CRR073311	Second white 3	23.422
	CRR073312	Silver flowering 1	22.541
	CRR073313	Silver flowering 2	20.826
	CRR073314	Silver flowering 3	18.764
	CRR073315	Gold flowering 1	7.473
	CRR073316	Gold flowering 2	15.374
	CRR073317	Gold flowering 3	6.879
	CRR073318	Tawny withering 1	16.386
	CRR073319	Tawny withering 2	16.505
	CRR073320	Tawny withering 3	14.584