Gene detail

Detail information of GWHGAAZE013760

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010655209.1	1.5746E-139	PREDICTED: zinc finger protein NUTCRACKER isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9FFH3\|IDD8_ARATH	8E-99	Zinc finger protein NUTCRACKER
trEMBL	tr\|U5GSK8\|U5GSK8_POPTR	3E-127	Uncharacterized protein {ECO:0000313\|EMBL:ERP65416.1} (Fragment)
TAIR10	AT5G44160.1	1E-83	C2H2-like zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	107768040	107770765	+
GWHAAZE00000003	mRNA	107768040	107770765	+
GWHAAZE00000003	exon	107768040	107768166	+
GWHAAZE00000003	exon	107768279	107768715	+
GWHAAZE00000003	exon	107769301	107770251	+
GWHAAZE00000003	exon	107770754	107770765	+
GWHAAZE00000003	CDS	107768040	107768166	+
GWHAAZE00000003	CDS	107768279	107768715	+
GWHAAZE00000003	CDS	107769301	107770251	+
GWHAAZE00000003	CDS	107770754	107770765	+

Transcript Sequence
>GWHTAAZE013774 ATGTCCAACTTTATTCAAGAATTTGAAGAAGAGGACATTGAGCAGTTTGATGGAGACCACGATACTAGTTATATTAATCCAACTGTGACTGCCTCAAAGAAGAAAAGAAATCTCCCGGGGAATCCTGACCCGGAAGCAGAAGTAGTGGCTTTGTCGCCAAGGACACTAATGGCAACCAACAGGTACATATGTGAGGTATGTCACAAGGGATTTCAGAGGGATCAGAACCTTCAGCTGCACAGGAGAGGACACAATCTGCCTTGGAAGCTGAAGCAGAGGAATCCACAAGAAGCGAAGGATGTGAAGAAGAGGGTTTACGTGTGCCCCGAGTCCAACTGCGTACACAATGACCCCAGCAGGGCACTGGGGGACTTAACTGGCATAAAGAAGCACTTCTGCAGGAAGCACGGTGAGAAGAAATGGAAGTGCGACAAGTGCTCCAAGCGTTATGCCGTCCAGTCTGACTGGAAGGCCCACTCCAAGATCTGCGGCACTCGCGAATACCGCTGTGATTGCGGCACCATTTTCTCCAGGTCCAAGCCCCACCCCAATCATTTATTCATTGAAAAAACTCAATTCTTTTTTAATGTCTGCAATTTTGTCAGCAGTGATCAGTACTCGCTCTCGAGCTTTTACATAAATATTAATGTGATTGTTTGTTTCAATTTGGAGTGCAGGAAAGATAGTTTTGTGACACACAGAGCCTTTTGCGATGCATTGACAGAGGAGAACTACAAAATGAACCAAAAGCCCCTTGCTGCAACTGGAGGAGGAGGAACATCAATGTTGCACAGCCAAGGTCAAGCAAATCAAGACCTTTTCTCTGACTCCGGCCTCATGAATCTATCAGTTAATTCTCATCAGTACTCACAAGGGGTCATGTTGAAATCTTCTTCTCCTTCTTCTCTGTCTTCCAATTTCTTCAATCCAAGATCCTTAACCGCATGCCCGCGAAGCTGCTTTAGCTCTTCCATCGTCAACGACTTTGCCTCCTCGGCCTATGCCTCAGCGACTGCCTTGTTGCAGAAGGCCTCAGAAATGAGTTCAAAGATCAGCGATGACAACTCCTCCATTGCCCCAATCCTCCTCAGAGGTTTCACTGGCTATTCCAGTAATAACAACAACTTGACCACCACCACTACTACAGTTCAAGAATTTTCTTCTTCCTGTAAAGTGTCTGCAACTACTACTAACAATAATATTAGTAGTGGTGTATTATCCTATGTAGGAGAAGTAGGAGGAGCAGGACGAAACCAACAAATGTTTGATTTTGACAAGAATTTGGAAGAGGCCGTCAGAGATGATCAAAGAGCTGGTTGCCCTCATCAGGATCAAGAATATTATTATGGTGGTAGTTTATATGATGATTCGTCTCTTTTGATGCATTCTTCCTCAAAGACAAACAATACCGCACAAGTATTCAGAGGAGGAGGTGAAAAAATGACAGTTGATTTCTTGGGAGTAGAACCTGCTCACTCAAACTTTGGGAAGAAGAGAAGCTACGATGGCAACAATACTATGCCTTAA

Network for GWHGAAZE013760

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.983
	SRR3591706	second leaf	1.387
	SRR3591707	mature leaf	7.251
	SRR3591708	Shoot apex	3.866
	SRR3591709	Stem	8.676
	SRR3591710	White floral bud	6.409
	SRR3591711	White flower	10.642
	SRR3591712	Green floral bud	1.291
	SRR3591713	Yellow flower	6.565
SRP173429	SRR8316895	Juvenile bud stage	7.728
	SRR8316896	Juvenile bud stage	10.460
	SRR8316897	Juvenile bud stage	3.575
	SRR8316894	Third green stage	4.340
	SRR8316900	Third green stage	8.358
	SRR8316901	Third green stage	10.286
	SRR8316898	Complete white stage	5.252
	SRR8316899	Complete white stage	12.996
	SRR8316903	Complete white stage	12.585
	SRR8316902	Silver flowering stage	11.090
	SRR8316904	Silver flowering stage	13.130
	SRR8316905	Silver flowering stage	6.200
	SRR8316906	Gold flowering stage	15.977
	SRR8316907	Gold flowering stage	17.820
	SRR8316908	Gold flowering stage	18.135
SRP132670	SRR6706286	Control	10.868
	SRR6706287	Light intensity 50%	10.554
	SRR6706288	Light intensity 20%	10.797
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.138
	CNS0095593	Slightly white alabastrum(diploid) 2	7.437
	CNS0095594	Slightly white alabastrum(diploid) 3	5.892
	CNS0095595	Whole white alabastrum(diploid) 2	8.984
	CNS0095596	Whole white alabastrum(diploid) 3	4.433
	CNS0095597	Whole white alabastrum(diploid) 4	8.101
	CNS0095598	Silvery flower (diploied) 1	13.095
	CNS0095599	Silvery flower (diploied) 2	11.275
	CNS0095600	Silvery flower (diploied) 3	16.832
	CNS0095601	Golden flower (diploid) 1	10.674
	CNS0095602	Golden flower (diploid) 2	14.288
	CNS0095603	Golden flower (diploid) 3	14.402
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.836
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.349
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.935
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.142
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.853
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.613
	CNS0095610	Silvery flower (tetraploid) 1	15.322
	CNS0095611	Silvery flower (tetraploid) 2	13.700
	CNS0095612	Silvery flower (tetraploid) 3	20.295
	CNS0095613	Golden flower (tetraploid) 1	9.168
	CNS0095614	Golden flower (tetraploid) 2	13.262
	CNS0095615	Golden flower (tetraploid) 3	16.752
CRA001975	CRR073297	Stem 1	20.950
	CRR073298	Stem 2	16.125
	CRR073299	Stem 3	3.231
	CRR073300	Leaf 1	14.477
	CRR073301	Leaf 2	16.811
	CRR073302	Leaf 3	3.616
	CRR073303	Juvenile bud 1	4.342
	CRR073304	Juvenile bud 2	1.524
	CRR073305	Juvenile bud 3	5.820
	CRR073306	Third green 1	3.485
	CRR073307	Third green 2	1.687
	CRR073308	Third green 3	3.956
	CRR073309	Second white 1	1.596
	CRR073310	Second white 2	5.051
	CRR073311	Second white 3	4.115
	CRR073312	Silver flowering 1	2.350
	CRR073313	Silver flowering 2	2.843
	CRR073314	Silver flowering 3	2.846
	CRR073315	Gold flowering 1	6.492
	CRR073316	Gold flowering 2	12.229
	CRR073317	Gold flowering 3	0.740
	CRR073318	Tawny withering 1	8.657
	CRR073319	Tawny withering 2	10.537
	CRR073320	Tawny withering 3	5.165