Gene detail

Detail information of GWHGAAZE013745

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGT01909.1	3.7139E-118	NAC transcription factor [Camellia sinensis]
Swissprot	tr\|Q8GY42\|NAC25_ARATH	2E-59	NAC transcription factor 25
trEMBL	tr\|S5XG86\|S5XG86_CAMSI	1E-118	NAC transcription factor {ECO:0000313\|EMBL:AGT01909.1}
TAIR10	AT5G13180.1	2E-73	NAC domain containing protein 83

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	107495693	107496702	+
GWHAAZE00000003	mRNA	107495693	107496702	+
GWHAAZE00000003	exon	107495693	107495873	+
GWHAAZE00000003	exon	107496045	107496292	+
GWHAAZE00000003	exon	107496403	107496702	+
GWHAAZE00000003	CDS	107495693	107495873	+
GWHAAZE00000003	CDS	107496045	107496292	+
GWHAAZE00000003	CDS	107496403	107496702	+

Transcript Sequence
>GWHTAAZE013759 ATGGAGAAGCTTAACTTTGTGAAGAATGGTGTGCTTAGATTGCCTCCTGGGTTTAGGTTCCATCCAACGGATGAAGAGCTAGTGGTCCAGTACTTGAAGCGTAAAGTGTTTTTGTGCCCTTTGCCTGCTTTCATCATCCCTGAGGTCGATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGAGTCGGAGCAAGAGAAGTATTTTTTCAGCACCAGGGAAGTCAAGTACCCAAATGGGAGCAGATCAAACAGAGCAACAGTCTCCGGCTACTGGAAGGCAACCGGCATAGACAAGCAAATTGCAACTTGTAGGAACAACCATGTTGTGGGCATCAAAAAAACTCTAGTTTTTTACAGAGGAAAACCTCCACATGGCTCTCGAACTGATTGGATCATGCACGAATATCGCCTTGTTAGCCCCCCACAGAGCTCTGCCGTGAAAATGGAGAACTGGGTGCTGTGCCGCATATTCTTGAAGAAGAGATGTATTAAAAATGAAGAGGAGGATATTACGAAATCGAGGAATGGTAACAAATGTAGGAGTGGTGGGAACAACAAGGCAGTTCGTTTCTATGATTTCATGGCAAAGGATTTGAATGAGGCACCTGCAGCTTGCTCCTCTTCTAGTGGGATAACAGAGGTGTCCTCTACTCAATCAGATGAACATGAAGAAGAAATTAGTAATTGCAATAATTTATCCACTTTTAGAAGAAAAACATTGCCTTGA

Network for GWHGAAZE013745

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	15	138	1.40E-35

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.068
	SRR3591706	second leaf	31.402
	SRR3591707	mature leaf	41.088
	SRR3591708	Shoot apex	11.078
	SRR3591709	Stem	21.603
	SRR3591710	White floral bud	21.985
	SRR3591711	White flower	35.358
	SRR3591712	Green floral bud	14.536
	SRR3591713	Yellow flower	48.070
SRP173429	SRR8316895	Juvenile bud stage	5.335
	SRR8316896	Juvenile bud stage	7.467
	SRR8316897	Juvenile bud stage	3.372
	SRR8316894	Third green stage	6.867
	SRR8316900	Third green stage	18.645
	SRR8316901	Third green stage	20.650
	SRR8316898	Complete white stage	21.612
	SRR8316899	Complete white stage	28.003
	SRR8316903	Complete white stage	30.390
	SRR8316902	Silver flowering stage	14.503
	SRR8316904	Silver flowering stage	20.537
	SRR8316905	Silver flowering stage	9.533
	SRR8316906	Gold flowering stage	36.798
	SRR8316907	Gold flowering stage	34.454
	SRR8316908	Gold flowering stage	54.378
SRP132670	SRR6706286	Control	26.358
	SRR6706287	Light intensity 50%	25.017
	SRR6706288	Light intensity 20%	19.945
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.912
	CNS0095593	Slightly white alabastrum(diploid) 2	19.756
	CNS0095594	Slightly white alabastrum(diploid) 3	19.943
	CNS0095595	Whole white alabastrum(diploid) 2	21.200
	CNS0095596	Whole white alabastrum(diploid) 3	17.376
	CNS0095597	Whole white alabastrum(diploid) 4	15.288
	CNS0095598	Silvery flower (diploied) 1	12.075
	CNS0095599	Silvery flower (diploied) 2	13.014
	CNS0095600	Silvery flower (diploied) 3	19.619
	CNS0095601	Golden flower (diploid) 1	5.560
	CNS0095602	Golden flower (diploid) 2	14.067
	CNS0095603	Golden flower (diploid) 3	14.635
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.927
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.823
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.128
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.382
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.954
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.971
	CNS0095610	Silvery flower (tetraploid) 1	18.929
	CNS0095611	Silvery flower (tetraploid) 2	11.736
	CNS0095612	Silvery flower (tetraploid) 3	18.279
	CNS0095613	Golden flower (tetraploid) 1	25.023
	CNS0095614	Golden flower (tetraploid) 2	28.153
	CNS0095615	Golden flower (tetraploid) 3	30.991
CRA001975	CRR073297	Stem 1	8.548
	CRR073298	Stem 2	11.996
	CRR073299	Stem 3	11.465
	CRR073300	Leaf 1	27.806
	CRR073301	Leaf 2	29.351
	CRR073302	Leaf 3	24.172
	CRR073303	Juvenile bud 1	26.771
	CRR073304	Juvenile bud 2	14.877
	CRR073305	Juvenile bud 3	24.950
	CRR073306	Third green 1	86.064
	CRR073307	Third green 2	63.960
	CRR073308	Third green 3	70.016
	CRR073309	Second white 1	39.975
	CRR073310	Second white 2	62.135
	CRR073311	Second white 3	44.960
	CRR073312	Silver flowering 1	43.396
	CRR073313	Silver flowering 2	19.899
	CRR073314	Silver flowering 3	26.344
	CRR073315	Gold flowering 1	21.843
	CRR073316	Gold flowering 2	28.416
	CRR073317	Gold flowering 3	24.149
	CRR073318	Tawny withering 1	58.871
	CRR073319	Tawny withering 2	76.753
	CRR073320	Tawny withering 3	47.825