Detail information of GWHGAAZE013716


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009587026.12.3466E-132PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana tomentosiformis]
Swissprottr|P10708|CB12_SOLLC5E-132Chlorophyll a-b binding protein 7, chloroplastic (Precursor)
trEMBLtr|I1KHL4|I1KHL4_SOYBN8E-129Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G05320.1}
TAIR10AT3G61470.12E-88photosystem I light harvesting complex gene 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene106920355106921180+
GWHAAZE00000003mRNA106920355106921180+
GWHAAZE00000003exon106920355106920542+
GWHAAZE00000003exon106920636106920673+
GWHAAZE00000003exon106920762106921180+
GWHAAZE00000003CDS106920355106920542+
GWHAAZE00000003CDS106920636106920673+
GWHAAZE00000003CDS106920762106921180+
Transcript Sequence

Network for GWHGAAZE013716

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00504.22Chloroa_b-bind562061.50E-44
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08908LHCA2 Metabolic pathways map01100
Photosynthesis - antenna proteinsmap00196

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf416.318
SRR3591706second leaf2241.560
SRR3591707mature leaf1986.455
SRR3591708Shoot apex753.227
SRR3591709Stem418.093
SRR3591710White floral bud52.953
SRR3591711White flower59.000
SRR3591712Green floral bud57.154
SRR3591713Yellow flower19.333
SRP173429 SRR8316895Juvenile bud stage 157.937
SRR8316896Juvenile bud stage 149.903
SRR8316897Juvenile bud stage 74.182
SRR8316894Third green stage 56.279
SRR8316900Third green stage 115.733
SRR8316901Third green stage 97.448
SRR8316898Complete white stage 18.450
SRR8316899Complete white stage 73.255
SRR8316903Complete white stage 36.887
SRR8316902Silver flowering stage5.632
SRR8316904Silver flowering stage7.970
SRR8316905Silver flowering stage3.469
SRR8316906Gold flowering stage 8.746
SRR8316907Gold flowering stage 8.542
SRR8316908Gold flowering stage 10.232
SRP132670SRR6706286Control200.117
SRR6706287Light intensity 50%147.216
SRR6706288Light intensity 20%150.371
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1146.793
CNS0095593Slightly white alabastrum(diploid) 298.558
CNS0095594Slightly white alabastrum(diploid) 3100.261
CNS0095595Whole white alabastrum(diploid) 296.519
CNS0095596Whole white alabastrum(diploid) 395.639
CNS0095597Whole white alabastrum(diploid) 464.954
CNS0095598Silvery flower (diploied) 1181.475
CNS0095599Silvery flower (diploied) 2167.413
CNS0095600Silvery flower (diploied) 369.848
CNS0095601Golden flower (diploid) 1156.001
CNS0095602Golden flower (diploid) 2120.932
CNS0095603Golden flower (diploid) 3122.554
CNS0095604Slightly white alabastrum(tetraploid) 1124.149
CNS0095605Slightly white alabastrum(tetraploid) 2128.624
CNS0095606Slightly white alabastrum(tetraploid) 3217.738
CNS0095607Whole white alabastrum(tetraploid) 154.530
CNS0095608Whole white alabastrum(tetraploid) 249.985
CNS0095609Whole white alabastrum(tetraploid) 3120.324
CNS0095610Silvery flower (tetraploid) 161.279
CNS0095611Silvery flower (tetraploid) 2132.224
CNS0095612Silvery flower (tetraploid) 340.330
CNS0095613Golden flower (tetraploid) 116.963
CNS0095614Golden flower (tetraploid) 261.002
CNS0095615Golden flower (tetraploid) 39.018
CRA001975CRR073297Stem 1154.879
CRR073298Stem 2126.830
CRR073299Stem 3224.813
CRR073300Leaf 132.723
CRR073301Leaf 239.532
CRR073302Leaf 340.041
CRR073303Juvenile bud 130.009
CRR073304Juvenile bud 216.790
CRR073305Juvenile bud 352.295
CRR073306Third green 15.220
CRR073307Third green 23.087
CRR073308Third green 36.588
CRR073309Second white 110.414
CRR073310Second white 24.949
CRR073311Second white 32.935
CRR073312Silver flowering 11.573
CRR073313Silver flowering 22.275
CRR073314Silver flowering 33.332
CRR073315Gold flowering 11847.925
CRR073316Gold flowering 21736.776
CRR073317Gold flowering 32065.454
CRR073318Tawny withering 1135.506
CRR073319Tawny withering 2101.554
CRR073320Tawny withering 3119.853