Gene detail

Detail information of GWHGAAZE013674

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008389752.1	9.7704E-174	PREDICTED: uncharacterized protein LOC103452055 [Malus domestica]
Swissprot	tr\|A1L4V7\|DCYD2_ARATH	4E-157	D-cysteine desulfhydrase 2, mitochondrial (Precursor)
trEMBL	tr\|M5XJD8\|M5XJD8_PRUPE	1E-170	Uncharacterized protein {ECO:0000313\|EMBL:EMJ26029.1}
TAIR10	AT3G26115.1	5E-110	Pyridoxal-5'-phosphate-dependent enzyme family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	106262495	106264524	-
GWHAAZE00000003	mRNA	106262495	106264524	-
GWHAAZE00000003	exon	106262495	106262726	-
GWHAAZE00000003	exon	106263057	106263146	-
GWHAAZE00000003	exon	106263287	106263416	-
GWHAAZE00000003	exon	106263531	106263848	-
GWHAAZE00000003	exon	106263949	106263991	-
GWHAAZE00000003	exon	106264174	106264524	-
GWHAAZE00000003	CDS	106264174	106264524	-
GWHAAZE00000003	CDS	106263949	106263991	-
GWHAAZE00000003	CDS	106263531	106263848	-
GWHAAZE00000003	CDS	106263287	106263416	-
GWHAAZE00000003	CDS	106263057	106263146	-
GWHAAZE00000003	CDS	106262495	106262726	-

Transcript Sequence
>GWHTAAZE013688 ATGTTTTTGCTCGCTCAGTTTCAGGTTGCTTCCAAGCTCAACCAGTGGGATGACAAGCTCATATCAAAATTACTTGATAGAAGATGGACATTGATCAACCCGGATTCCAAGATTCATCAAATAATGGTGCCAGACAGATCGTTAGAACAGCAAGGTGGTACGTTTGGAATCACTTCCTTCTCTAACAATCCACATCCTTCTTTGGGTGATAACAAGATGGAAAAGAACAACCACCAGTCATCCTTTTATGTTGTGCGGGATGATTTGCTGCACCCACTGGTAAATGGTAATAAGGCAAGAAAATTGGATGGACTGCTTCCTCTTGTTGAAGATCATTCAGCGACCGATGTGGTCACTTGTGGAGGTTGCCAAAGTGCACATGCTGCAGCTGTTGCTGTTTCATGTGCAGAGAGGGGACTAAAGTCACATTTGCTTCTCCGTGGAGAACAGCCCGAAATACCAACTGGCTACAATCTGATTTCCACGTTATATGGAAATGTCACTTATGTCCCTAGATCTCTATATGCCAAGAGGGACGAAATGCTTGCAAGACATGCTGATTTGGTAGCGGGCAGTTGCGGTTCTGTTGTGTGGCTCAATGATTTACGAGAGGCTTCGTTTACAAATCATACACCTGCTAAACCAATATTTGAGAATATAAAAAAAGTTGTTATCATCAATGAAGGTGCAGGGGATACTGTAGGGTTGCTAGGTGTAATTCGCTTTGTGAAGTACTTGTCGCAAAATCATTTACTTGGAAAAGAGAAGGCTGTTAAAATTGTTATAGATTCTGGCACTGGGACAACCGCTGTTGGTTTAGGACTTGGTGCCTTATATTTAGGGCTCCCATGGGAGATAACTGCAGTGATGCTTGCTGATACTATTGACGGGTACAAAAAAATGGAGGAACGCTTGATATCAGAATTTCATAGATTTGGCAATGTATTAAAAGGAGAAGTGGAGACGTGTCAACAGATTGCACAACAAACTGGCATTCTGGTGGATCCTGTATACACATTAGCTGCTTGGGAGCTCGCTTCCCAACTCTGTCAAGTGGAGGGAAAAGACGGTGCAAAGGTGGTGATGCTTCACACTGGGGGCACACTTGGCATGTTTGGATTGGCACAACGATACAAGTCTTATTTCAAAGATGAAAGTAGATAA

Network for GWHGAAZE013674

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05396	dcyD	Metabolic pathways	map01100
K05396	dcyD	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.106
	SRR3591706	second leaf	6.330
	SRR3591707	mature leaf	4.405
	SRR3591708	Shoot apex	14.011
	SRR3591709	Stem	8.227
	SRR3591710	White floral bud	1.492
	SRR3591711	White flower	1.421
	SRR3591712	Green floral bud	3.313
	SRR3591713	Yellow flower	0.477
SRP173429	SRR8316895	Juvenile bud stage	2.706
	SRR8316896	Juvenile bud stage	3.279
	SRR8316897	Juvenile bud stage	0.859
	SRR8316894	Third green stage	1.944
	SRR8316900	Third green stage	5.972
	SRR8316901	Third green stage	4.460
	SRR8316898	Complete white stage	0.662
	SRR8316899	Complete white stage	7.609
	SRR8316903	Complete white stage	0.590
	SRR8316902	Silver flowering stage	0.316
	SRR8316904	Silver flowering stage	0.296
	SRR8316905	Silver flowering stage	0.206
	SRR8316906	Gold flowering stage	0.806
	SRR8316907	Gold flowering stage	0.612
	SRR8316908	Gold flowering stage	0.230
SRP132670	SRR6706286	Control	6.454
	SRR6706287	Light intensity 50%	7.224
	SRR6706288	Light intensity 20%	7.261
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.067
	CNS0095593	Slightly white alabastrum(diploid) 2	3.130
	CNS0095594	Slightly white alabastrum(diploid) 3	2.454
	CNS0095595	Whole white alabastrum(diploid) 2	2.574
	CNS0095596	Whole white alabastrum(diploid) 3	1.951
	CNS0095597	Whole white alabastrum(diploid) 4	2.140
	CNS0095598	Silvery flower (diploied) 1	5.153
	CNS0095599	Silvery flower (diploied) 2	3.643
	CNS0095600	Silvery flower (diploied) 3	1.425
	CNS0095601	Golden flower (diploid) 1	2.426
	CNS0095602	Golden flower (diploid) 2	1.542
	CNS0095603	Golden flower (diploid) 3	1.601
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.736
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.658
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.240
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.955
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.435
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.628
	CNS0095610	Silvery flower (tetraploid) 1	1.265
	CNS0095611	Silvery flower (tetraploid) 2	2.459
	CNS0095612	Silvery flower (tetraploid) 3	1.316
	CNS0095613	Golden flower (tetraploid) 1	0.712
	CNS0095614	Golden flower (tetraploid) 2	0.546
	CNS0095615	Golden flower (tetraploid) 3	0.163
CRA001975	CRR073297	Stem 1	5.519
	CRR073298	Stem 2	4.626
	CRR073299	Stem 3	4.362
	CRR073300	Leaf 1	5.136
	CRR073301	Leaf 2	3.810
	CRR073302	Leaf 3	3.959
	CRR073303	Juvenile bud 1	4.392
	CRR073304	Juvenile bud 2	2.199
	CRR073305	Juvenile bud 3	3.583
	CRR073306	Third green 1	0.021
	CRR073307	Third green 2	0.277
	CRR073308	Third green 3	0.433
	CRR073309	Second white 1	0.068
	CRR073310	Second white 2	0.273
	CRR073311	Second white 3	0.222
	CRR073312	Silver flowering 1	0.041
	CRR073313	Silver flowering 2	0.157
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	5.967
	CRR073316	Gold flowering 2	6.642
	CRR073317	Gold flowering 3	4.122
	CRR073318	Tawny withering 1	4.056
	CRR073319	Tawny withering 2	3.681
	CRR073320	Tawny withering 3	3.651