Gene detail

Detail information of GWHGAAZE013648

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP13230.1	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068UXJ8\|A0A068UXJ8_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_74 {ECO:0000313\|EMBL:CDP13230.1}
TAIR10	AT1G12990.1	beta-1,4-N-acetylglucosaminyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	105974407	105975483	+
GWHAAZE00000003	mRNA	105974407	105975483	+
GWHAAZE00000003	exon	105974407	105975483	+
GWHAAZE00000003	CDS	105974407	105975483	+

Transcript Sequence
>GWHTAAZE013662 ATGTCAAGATTACGATGTGTTCTACGTGGACTGGATTTAAAAACCTACATCTTTATATTCCTTCTGATCCCAACATGCGTCTTCGGTTTGTACATGCACGGCCAAAAGATCTCTTACTTTTTGCGGCCATTATGGGAATCGCCGCCCAAACCCTTCCATGAAATTCCCCACTATTATCATGAGAATGTGTCAATGGAAAATCTATGCAAGCTTCATGGTTGGGGAATCCGCGAGTCCCCCAGACGCGTGTTCGATGCAGTGCTGTTCAATAACGAAGTGGACCTCCTTACAATAAGATGGAAAGAACTGTATCCCTATGTAACAGAGTTTGTTCTCCTTGAGTCGAATTCAACATTTACAGGTTTGCCAAAGCCCCTAGTGTTTGCCAGCAATTCAGATCAGTTCAAGTTTATCGAGTCAAGGTTGACCTATGGGAATATTCCGGGGAGATTGAAGAAAGGTGAAAACCCGTTTATCGAGGAGGCTTATCAGCGACTAGCATTGGATTATCTTCTCAAACAAGCGGGAATTCAAGACGATGACCTTTTGTTAATGTCTGATGTTGACGAGATACCCAGTAGACACACTATCAATCTCTTGAGGTGGTGTGATGACATACCTCCAGTTCTTCATCTTCGGTTGAAGAACTATCTATATTCATTTGAGTTTCTTCTTGACAATAATAGCTGGAGAGCTTCGATCCATGTGTATCAGTCGGGTAAAACAAGGTATGCACATTATCGCCAGTCAAACGAGATCTTAGCAGATGCGGGGTGGCATTGTAGCTTTTGCTTCCGGCGTATCAGCGAGTTCGTATTTAAGATGAAAGCATACAGTCATTTCGACAGAGTGAGGTTTTCTAACTATTTGAACCCTAAAAGGGTTCAGAAAGTAATTTGCAAAGGGGCTGACCTATTTGATATGCTACCAGAGGAGTACACGTTCAAGGACATCATAGGTAAAATGGGGCCCATTCCGCATTCTTACTCTGCTGTTCATCTTCCTTCGTATCTATTAGAGAATGCTGACAAGTACAAGTTTCTCTTGCCCGGTAACTGCATACGAGAAAGTGGCTGA

Network for GWHGAAZE013648

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04724.14	Glyco_transf_17	11	356	4.10E-184

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00737	MGAT3	Metabolic pathways	map01100
K00737	MGAT3	N-Glycan biosynthesis	map00510

Gene Ontology

GO term	Ontology	Name
GO:0006487	biological_process	protein N-linked glycosylation
GO:0016020	cellular_component	membrane
GO:0003830	molecular_function	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.219
	SRR3591706	second leaf	17.446
	SRR3591707	mature leaf	18.853
	SRR3591708	Shoot apex	16.355
	SRR3591709	Stem	43.396
	SRR3591710	White floral bud	20.652
	SRR3591711	White flower	32.471
	SRR3591712	Green floral bud	21.960
	SRR3591713	Yellow flower	22.176
SRP173429	SRR8316895	Juvenile bud stage	43.485
	SRR8316896	Juvenile bud stage	47.095
	SRR8316897	Juvenile bud stage	22.573
	SRR8316894	Third green stage	12.363
	SRR8316900	Third green stage	23.841
	SRR8316901	Third green stage	36.128
	SRR8316898	Complete white stage	5.148
	SRR8316899	Complete white stage	66.664
	SRR8316903	Complete white stage	10.444
	SRR8316902	Silver flowering stage	7.559
	SRR8316904	Silver flowering stage	6.394
	SRR8316905	Silver flowering stage	2.263
	SRR8316906	Gold flowering stage	14.423
	SRR8316907	Gold flowering stage	13.258
	SRR8316908	Gold flowering stage	23.103
SRP132670	SRR6706286	Control	12.609
	SRR6706287	Light intensity 50%	14.849
	SRR6706288	Light intensity 20%	13.442
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.568
	CNS0095593	Slightly white alabastrum(diploid) 2	22.818
	CNS0095594	Slightly white alabastrum(diploid) 3	26.337
	CNS0095595	Whole white alabastrum(diploid) 2	25.538
	CNS0095596	Whole white alabastrum(diploid) 3	16.372
	CNS0095597	Whole white alabastrum(diploid) 4	18.440
	CNS0095598	Silvery flower (diploied) 1	61.228
	CNS0095599	Silvery flower (diploied) 2	56.053
	CNS0095600	Silvery flower (diploied) 3	32.426
	CNS0095601	Golden flower (diploid) 1	42.843
	CNS0095602	Golden flower (diploid) 2	40.462
	CNS0095603	Golden flower (diploid) 3	40.425
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.940
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.854
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.250
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.060
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.678
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.262
	CNS0095610	Silvery flower (tetraploid) 1	9.502
	CNS0095611	Silvery flower (tetraploid) 2	7.038
	CNS0095612	Silvery flower (tetraploid) 3	13.287
	CNS0095613	Golden flower (tetraploid) 1	6.590
	CNS0095614	Golden flower (tetraploid) 2	6.245
	CNS0095615	Golden flower (tetraploid) 3	9.315
CRA001975	CRR073297	Stem 1	18.059
	CRR073298	Stem 2	22.444
	CRR073299	Stem 3	16.091
	CRR073300	Leaf 1	22.011
	CRR073301	Leaf 2	30.772
	CRR073302	Leaf 3	16.860
	CRR073303	Juvenile bud 1	23.085
	CRR073304	Juvenile bud 2	20.906
	CRR073305	Juvenile bud 3	43.074
	CRR073306	Third green 1	18.630
	CRR073307	Third green 2	19.791
	CRR073308	Third green 3	16.660
	CRR073309	Second white 1	12.729
	CRR073310	Second white 2	18.534
	CRR073311	Second white 3	14.867
	CRR073312	Silver flowering 1	53.696
	CRR073313	Silver flowering 2	38.218
	CRR073314	Silver flowering 3	29.407
	CRR073315	Gold flowering 1	44.277
	CRR073316	Gold flowering 2	56.655
	CRR073317	Gold flowering 3	42.828
	CRR073318	Tawny withering 1	27.800
	CRR073319	Tawny withering 2	38.722
	CRR073320	Tawny withering 3	33.124