Gene detail

Detail information of GWHGAAZE013601

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006438425.1	0	hypothetical protein CICLE_v10031988mg [Citrus clementina]
Swissprot	tr\|O82147\|SPDE_COFAR	0	Spermidine synthase
trEMBL	tr\|V4TJA9\|V4TJA9_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR51665.1}
TAIR10	AT1G23820.1	4E-143	spermidine synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	105146069	105149316	-
GWHAAZE00000003	mRNA	105146069	105149316	-
GWHAAZE00000003	exon	105146069	105146134	-
GWHAAZE00000003	exon	105146241	105146444	-
GWHAAZE00000003	exon	105146578	105146756	-
GWHAAZE00000003	exon	105146868	105146939	-
GWHAAZE00000003	exon	105147034	105147106	-
GWHAAZE00000003	exon	105147250	105147354	-
GWHAAZE00000003	exon	105148036	105148158	-
GWHAAZE00000003	exon	105148275	105148351	-
GWHAAZE00000003	exon	105149238	105149316	-
GWHAAZE00000003	CDS	105149238	105149316	-
GWHAAZE00000003	CDS	105148275	105148351	-
GWHAAZE00000003	CDS	105148036	105148158	-
GWHAAZE00000003	CDS	105147250	105147354	-
GWHAAZE00000003	CDS	105147034	105147106	-
GWHAAZE00000003	CDS	105146868	105146939	-
GWHAAZE00000003	CDS	105146578	105146756	-
GWHAAZE00000003	CDS	105146241	105146444	-
GWHAAZE00000003	CDS	105146069	105146134	-

Transcript Sequence
>GWHTAAZE013615 ATGGAGGACGGAAAAAAGCCAGAGTGTTTGTCTTCTGTCATACCCGGCTGGTTCTCTGAGATTAGCCCAATGTGGCCTGGAGAAGCTCACTCATTGAAAGTAGACAAGATCCTATTTCGAGGGAAGTCCGACTTCCAGGATGTTATGGTCTTTCAGTCGTCCACATATGGGAAGGTTCTTGTTTTAGATGGAGTGATTCAACTGACAGAAAGGGATGAATGTGCATATCAAGAGATGATTACACATCTCCCACTCTGCTCAATTCCCAACCCAAAGAAGGTTTTGGTCATTGGAGGGGGAGATGGTGGTGTCTTGCGTGAGGTTTCGCGTCATACATCTGTTGAGCAGATAGATATATGTGAGATTGATAAGATGGTTGTTGATGTCTCTAAACAATTTTTTCCTAGTGTAGCAGTTGGATACGAGGATCCTCGTGTAACACTACATGTTGGTGATGGAGTTGCATTCTTAAAGGCTGTTCCTGAAGGAACTTATGATGCAATTATAGTGGATTCTTCTGATCCAATAGGTCCGGCACAAGAGCTTTTTGAAAAGCCATTTTTTGCTTCGGTAGCAAAAGCTCTTCGTCCTGGAGGGGTTGTTTGTACGCAAGCAGAAAGCATATGGCTTCACATGCACATCATTGAAGATATCGTAGCAAACTGCCGCCAGATTTTTAAAGGTTCTGTCAACTATGCATGGACTACGACTGATAATATGATAGCGATTCATCCGAGAAGATTAACCCTGTCTGTAAATGTTCATGTCAAATTCATTTTCAGTGGGGTGATTGGATTCATGCTTTGCTCAACCGAGGGCCCCGCAGTTGACTTCAAGCATCCGGTAAACTCAATAGATTCCAACGATCTCCATTGCAAATCGAAAGGAATCTTGAAATTCTACAACTCTGAGATTCATGCAGCTGCTTTCTGCTTGCCATCTTTTGCGAAGAAGGTGATTGAATCCAAAGCCAAGTGA

Network for GWHGAAZE013601

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17284.3	Spermine_synt_N	16	70	3.00E-24
PF01564.18	Spermine_synth	73	237	1.00E-65

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00797	speE, SRM, SPE3	Metabolic pathways	map01100
		Cysteine and methionine metabolism	map00270
		Arginine and proline metabolism	map00330
		Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0006595	biological_process	polyamine metabolic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.784
	SRR3591706	second leaf	32.993
	SRR3591707	mature leaf	17.281
	SRR3591708	Shoot apex	53.222
	SRR3591709	Stem	35.605
	SRR3591710	White floral bud	32.577
	SRR3591711	White flower	30.852
	SRR3591712	Green floral bud	50.346
	SRR3591713	Yellow flower	18.020
SRP173429	SRR8316895	Juvenile bud stage	38.455
	SRR8316896	Juvenile bud stage	67.449
	SRR8316897	Juvenile bud stage	26.247
	SRR8316894	Third green stage	23.703
	SRR8316900	Third green stage	49.523
	SRR8316901	Third green stage	56.307
	SRR8316898	Complete white stage	9.905
	SRR8316899	Complete white stage	33.043
	SRR8316903	Complete white stage	12.870
	SRR8316902	Silver flowering stage	9.341
	SRR8316904	Silver flowering stage	10.961
	SRR8316905	Silver flowering stage	4.383
	SRR8316906	Gold flowering stage	10.869
	SRR8316907	Gold flowering stage	13.508
	SRR8316908	Gold flowering stage	15.040
SRP132670	SRR6706286	Control	28.205
	SRR6706287	Light intensity 50%	26.940
	SRR6706288	Light intensity 20%	27.564
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	62.158
	CNS0095593	Slightly white alabastrum(diploid) 2	78.892
	CNS0095594	Slightly white alabastrum(diploid) 3	72.826
	CNS0095595	Whole white alabastrum(diploid) 2	50.158
	CNS0095596	Whole white alabastrum(diploid) 3	63.393
	CNS0095597	Whole white alabastrum(diploid) 4	33.543
	CNS0095598	Silvery flower (diploied) 1	26.131
	CNS0095599	Silvery flower (diploied) 2	17.530
	CNS0095600	Silvery flower (diploied) 3	15.522
	CNS0095601	Golden flower (diploid) 1	14.169
	CNS0095602	Golden flower (diploid) 2	13.589
	CNS0095603	Golden flower (diploid) 3	13.387
	CNS0095604	Slightly white alabastrum(tetraploid) 1	70.882
	CNS0095605	Slightly white alabastrum(tetraploid) 2	66.359
	CNS0095606	Slightly white alabastrum(tetraploid) 3	64.983
	CNS0095607	Whole white alabastrum(tetraploid) 1	52.260
	CNS0095608	Whole white alabastrum(tetraploid) 2	39.428
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.686
	CNS0095610	Silvery flower (tetraploid) 1	18.543
	CNS0095611	Silvery flower (tetraploid) 2	15.537
	CNS0095612	Silvery flower (tetraploid) 3	23.571
	CNS0095613	Golden flower (tetraploid) 1	9.500
	CNS0095614	Golden flower (tetraploid) 2	13.610
	CNS0095615	Golden flower (tetraploid) 3	7.230
CRA001975	CRR073297	Stem 1	37.923
	CRR073298	Stem 2	35.027
	CRR073299	Stem 3	36.545
	CRR073300	Leaf 1	34.895
	CRR073301	Leaf 2	34.412
	CRR073302	Leaf 3	35.796
	CRR073303	Juvenile bud 1	22.053
	CRR073304	Juvenile bud 2	11.094
	CRR073305	Juvenile bud 3	17.263
	CRR073306	Third green 1	6.640
	CRR073307	Third green 2	8.168
	CRR073308	Third green 3	8.651
	CRR073309	Second white 1	12.342
	CRR073310	Second white 2	8.915
	CRR073311	Second white 3	9.198
	CRR073312	Silver flowering 1	8.936
	CRR073313	Silver flowering 2	9.396
	CRR073314	Silver flowering 3	9.410
	CRR073315	Gold flowering 1	24.151
	CRR073316	Gold flowering 2	28.605
	CRR073317	Gold flowering 3	17.385
	CRR073318	Tawny withering 1	42.086
	CRR073319	Tawny withering 2	27.272
	CRR073320	Tawny withering 3	50.326