Gene detail

Detail information of GWHGAAZE013563

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17302.1	4.01034E-95	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FUS9\|GSTUI_ARATH	5E-79	Glutathione S-transferase U18
trEMBL	tr\|A0A068V9U2\|A0A068V9U2_COFCA	1E-95	Coffea canephora DH200=94 genomic scaffold, scaffold_153 {ECO:0000313\|EMBL:CDP17302.1}
TAIR10	AT1G10360.1	7E-61	glutathione S-transferase TAU 18

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	104388182	104389028	-
GWHAAZE00000003	mRNA	104388182	104389028	-
GWHAAZE00000003	exon	104388182	104388529	-
GWHAAZE00000003	exon	104388711	104389028	-
GWHAAZE00000003	CDS	104388711	104389028	-
GWHAAZE00000003	CDS	104388182	104388529	-

Transcript Sequence
>GWHTAAZE013577 ATGGCAACAAGTGAGGTAAAGCTTCTAGGTGCACAATCAAGCCCCTATGTGAATCGGGTTCAAATCGCACTCAACTTGAAGTCCATCGACTATGAGTTCATCAACGAGAATTTAGCTGCCAAGAGCGATCTCCTCCTGAAATCCAATCCAATCTACAAAAAAGTCCCCGTTCTTATCCACGCTGACAAGCCCATATGTGAATCCCTCTTCATAGTCGAGTACATCGACGAAGTGTGGACCAATTCTCCTTCAATTCTCCCTTCTGATCCCTATGATCGTGCCACAGCCCGCTTTTGGGCAGCCTATATTGATATTAAGACAGGTAAAGGGGGAGGAGGCAAAAGCAGCAGTTGTAGAAAAATAGTGGAAGGGCTGGTGTTATTAGAGGAGGCATTTGTCAAGTGTAGCAAAGGGGAGGTTTATTTTGGTGGGGAAAGTATCGGGTATGTTGATATAATTTTGGGGTCATACTTGGGGTGGGTGAAGGCAGGGGAAATAATGGCTAGTGTAAAGCTGCTTGATGAAACCAAGACACCAGGGCTAGTGGGATGGGCTGAGAGGGTTCTTTCAAATGATGCTGCTAAGGATGTTGTGCCTGAGCCTCAAGTACTTATTGAGGTTCTTAATAAGTTTATGATGGCCAGTGCTAAAGCTTCTTCAAATTAA

Network for GWHGAAZE013563

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02798.21	GST_N	5	77	7.90E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00799	GST, gst	Metabolic pathways	map01100
		Glutathione metabolism	map00480
		Metabolism of xenobiotics by cytochrome P450	map00980
		Drug metabolism - cytochrome P450	map00982
		Drug metabolism - other enzymes	map00983
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.430
	SRR3591706	second leaf	12.810
	SRR3591707	mature leaf	24.159
	SRR3591708	Shoot apex	27.103
	SRR3591709	Stem	82.661
	SRR3591710	White floral bud	83.694
	SRR3591711	White flower	34.579
	SRR3591712	Green floral bud	87.897
	SRR3591713	Yellow flower	12.080
SRP173429	SRR8316895	Juvenile bud stage	18.786
	SRR8316896	Juvenile bud stage	26.628
	SRR8316897	Juvenile bud stage	17.899
	SRR8316894	Third green stage	14.438
	SRR8316900	Third green stage	49.682
	SRR8316901	Third green stage	43.021
	SRR8316898	Complete white stage	22.726
	SRR8316899	Complete white stage	72.221
	SRR8316903	Complete white stage	37.351
	SRR8316902	Silver flowering stage	12.679
	SRR8316904	Silver flowering stage	22.458
	SRR8316905	Silver flowering stage	11.332
	SRR8316906	Gold flowering stage	19.006
	SRR8316907	Gold flowering stage	26.445
	SRR8316908	Gold flowering stage	18.525
SRP132670	SRR6706286	Control	142.305
	SRR6706287	Light intensity 50%	127.344
	SRR6706288	Light intensity 20%	134.386
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	46.983
	CNS0095593	Slightly white alabastrum(diploid) 2	48.905
	CNS0095594	Slightly white alabastrum(diploid) 3	49.268
	CNS0095595	Whole white alabastrum(diploid) 2	47.396
	CNS0095596	Whole white alabastrum(diploid) 3	33.485
	CNS0095597	Whole white alabastrum(diploid) 4	52.982
	CNS0095598	Silvery flower (diploied) 1	63.397
	CNS0095599	Silvery flower (diploied) 2	63.508
	CNS0095600	Silvery flower (diploied) 3	34.526
	CNS0095601	Golden flower (diploid) 1	59.367
	CNS0095602	Golden flower (diploid) 2	37.236
	CNS0095603	Golden flower (diploid) 3	34.886
	CNS0095604	Slightly white alabastrum(tetraploid) 1	46.770
	CNS0095605	Slightly white alabastrum(tetraploid) 2	41.895
	CNS0095606	Slightly white alabastrum(tetraploid) 3	71.680
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.780
	CNS0095608	Whole white alabastrum(tetraploid) 2	46.276
	CNS0095609	Whole white alabastrum(tetraploid) 3	82.608
	CNS0095610	Silvery flower (tetraploid) 1	39.077
	CNS0095611	Silvery flower (tetraploid) 2	41.742
	CNS0095612	Silvery flower (tetraploid) 3	22.538
	CNS0095613	Golden flower (tetraploid) 1	11.617
	CNS0095614	Golden flower (tetraploid) 2	28.129
	CNS0095615	Golden flower (tetraploid) 3	4.264
CRA001975	CRR073297	Stem 1	22.321
	CRR073298	Stem 2	21.477
	CRR073299	Stem 3	29.677
	CRR073300	Leaf 1	33.290
	CRR073301	Leaf 2	34.725
	CRR073302	Leaf 3	37.935
	CRR073303	Juvenile bud 1	68.524
	CRR073304	Juvenile bud 2	95.754
	CRR073305	Juvenile bud 3	76.111
	CRR073306	Third green 1	33.137
	CRR073307	Third green 2	40.856
	CRR073308	Third green 3	26.935
	CRR073309	Second white 1	26.544
	CRR073310	Second white 2	4.383
	CRR073311	Second white 3	3.166
	CRR073312	Silver flowering 1	0.945
	CRR073313	Silver flowering 2	1.093
	CRR073314	Silver flowering 3	0.851
	CRR073315	Gold flowering 1	6.912
	CRR073316	Gold flowering 2	9.021
	CRR073317	Gold flowering 3	15.641
	CRR073318	Tawny withering 1	60.333
	CRR073319	Tawny withering 2	56.024
	CRR073320	Tawny withering 3	32.132