Gene detail

Detail information of GWHGAAZE013395

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010647968.1	0	PREDICTED: NAC domain-containing protein 8 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q6NQK2\|NAC8_ARATH	3E-143	NAC domain-containing protein 8
trEMBL	tr\|D7T997\|D7T997_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27068.3}
TAIR10	AT1G25580.1	3E-117	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	102007940	102011365	-
GWHAAZE00000003	mRNA	102007940	102011365	-
GWHAAZE00000003	exon	102011363	102011365	-
GWHAAZE00000003	exon	102010168	102010354	-
GWHAAZE00000003	exon	102009584	102010083	-
GWHAAZE00000003	exon	102008623	102009027	-
GWHAAZE00000003	exon	102007940	102008513	-
GWHAAZE00000003	CDS	102011363	102011365	-
GWHAAZE00000003	CDS	102010168	102010354	-
GWHAAZE00000003	CDS	102009584	102010083	-
GWHAAZE00000003	CDS	102008623	102009027	-
GWHAAZE00000003	CDS	102008457	102008513	-
GWHAAZE00000003	three_prime_UTR	102007940	102008456	-

Transcript Sequence
>GWHTAAZE013409 ATGGTCAATCAAGAGTGGCCAGGATTACCCAGAGGGGTGAAATTTGATCCGTCCGATCAAGAGATCATTTGGCATTTACTTGCAAAATCTGGTGTTGGAAAATTGAAACCCCATCCTTTTATTGACGAGTTTATTCCAACTGTTGAGGAAGATGGTGGGATCTGTTATACTCATCCTCAGAATTTACCAGGTGCGAAGCAAGATGGAAGTGTATCTCACTTCTTTCACAGAGCAATCAAAGCTTATAATACTGGTACTCGGAAGCGTCGAAAGATAAATGGGGTTGATCTTGGTGATGTTCGTTGGCACAAGACTGGGAGAACTAAACCTGTTAACTTGGATGGGGTTCAAAGAGGGTGTAAGAAGATTATGGTTCTTTATGCAAGCCTGGTTAGGGGTGGGAAACCCGAGAAGACGAATTGGGTGATGCACCAGTATCACTTGGGCACTGGGGAAGATGAAAAGGAAGGGGAGTACGTCATTTCCAAAGTCTTTTATCAGCAGCAACAAGTCAAACAGAGTGAAAGAATTGACGAAGATTTACCCGAAGCCATTGATGCTCCAATTGTTGAAGTAGATCCAGTCACTCCCACGTCTGCAACTCCTTTACCCCCTCGTGCTGAAAAGAAAATTTCTGATTTTGACCCTGGACAGCAATCCACTGTTGCTTGCGTTGATCCCTTTGTGCCGCTTTGCGAGATCGGGTGTATCGAGGATGAGGTAGAAGATGCAACTGAAAACACTGTTAATGAAGATCACCTCAAGGCAGAAAATCAGGCCGATGAAGTGGGACATAATAATGACAGTCAGAATGGCGAAGACCTGAAATGGTCGGACAGTATGTCACAATATTGGTTGGATTCACAACAACTTAAGGAATGCCTGCCCTTGTGTGATGATCTTTTTCAAAGCCAGTCTCCAAATAGGGATGGAAGTGACAATAAGGAGTTAAGATCAAAACCCCATCTTTCAGATTATTATGCTAACCTTGGACCGGAGGATCTAAAGAAAGATCTGCAGGAGTGTCAAGATTTGGTACTTGATCCTGCAAACATTGAAATCGATACACCTGATGATTTCCGGCTGAGCCAGCTTGAATTTGGGTCGCAATCAAGTTTCCTTGAATGGGGAGGAAGCAAGGAGGTCAAATGAACATGGATTCAACATTGCGACTTCATCCAAATCTGGACTAATGACTGCAAACTCTTGGTAACGTCTTTTGTTAGCCCACTAAATTGCTTTTGGGAAAATGTGAAAGCCCTTTACGGTGGTGCAATTATTGTTTTATATGTTGTATTTTGGTAGTCATGCTTTTTGAGGTATTCTACTGTATGTTTTATTTTCTTCTCTCTAAGAACATGAACAAGATTTCAAGTTTCTATATCCCTTGTTTATAATCTGGCTATGTAGACCCAAACTGATTAGTTGCATTATCAGATGGCTGCCGTACAGCTCGAGTTGTGAAAGATTCATGAACTTAAAAAGTCTTACAGGTCATTAAGATTGGTTTGAAAGTGGCTTGAGAGCCCAGTGGGACCTAGCCTTGCTGGTAGAAAGGCCCCACATGCGCGTGTATGTGGGGATTCACCCCTCTCTCTTTCTCTTTGCAAGTGTTTTTTCATGCAAAGTCTATTAAAAGAGTCCAGTTAGGGCATTTCTCGTAGGGCAT

Network for GWHGAAZE013395

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	10	148	3.70E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.583
	SRR3591706	second leaf	8.910
	SRR3591707	mature leaf	15.368
	SRR3591708	Shoot apex	28.537
	SRR3591709	Stem	21.224
	SRR3591710	White floral bud	15.110
	SRR3591711	White flower	19.095
	SRR3591712	Green floral bud	16.534
	SRR3591713	Yellow flower	16.234
SRP173429	SRR8316895	Juvenile bud stage	10.799
	SRR8316896	Juvenile bud stage	12.546
	SRR8316897	Juvenile bud stage	5.207
	SRR8316894	Third green stage	6.076
	SRR8316900	Third green stage	16.177
	SRR8316901	Third green stage	14.566
	SRR8316898	Complete white stage	6.755
	SRR8316899	Complete white stage	29.835
	SRR8316903	Complete white stage	10.186
	SRR8316902	Silver flowering stage	6.832
	SRR8316904	Silver flowering stage	8.119
	SRR8316905	Silver flowering stage	3.918
	SRR8316906	Gold flowering stage	16.849
	SRR8316907	Gold flowering stage	14.244
	SRR8316908	Gold flowering stage	19.075
SRP132670	SRR6706286	Control	12.924
	SRR6706287	Light intensity 50%	13.179
	SRR6706288	Light intensity 20%	12.942
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.872
	CNS0095593	Slightly white alabastrum(diploid) 2	11.286
	CNS0095594	Slightly white alabastrum(diploid) 3	10.466
	CNS0095595	Whole white alabastrum(diploid) 2	8.362
	CNS0095596	Whole white alabastrum(diploid) 3	8.932
	CNS0095597	Whole white alabastrum(diploid) 4	9.502
	CNS0095598	Silvery flower (diploied) 1	12.533
	CNS0095599	Silvery flower (diploied) 2	13.811
	CNS0095600	Silvery flower (diploied) 3	15.164
	CNS0095601	Golden flower (diploid) 1	12.164
	CNS0095602	Golden flower (diploid) 2	13.191
	CNS0095603	Golden flower (diploid) 3	11.890
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.883
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.277
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.247
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.085
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.695
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.208
	CNS0095610	Silvery flower (tetraploid) 1	12.287
	CNS0095611	Silvery flower (tetraploid) 2	13.569
	CNS0095612	Silvery flower (tetraploid) 3	8.467
	CNS0095613	Golden flower (tetraploid) 1	8.235
	CNS0095614	Golden flower (tetraploid) 2	10.949
	CNS0095615	Golden flower (tetraploid) 3	9.276
CRA001975	CRR073297	Stem 1	13.038
	CRR073298	Stem 2	11.988
	CRR073299	Stem 3	10.297
	CRR073300	Leaf 1	14.252
	CRR073301	Leaf 2	11.117
	CRR073302	Leaf 3	10.801
	CRR073303	Juvenile bud 1	13.111
	CRR073304	Juvenile bud 2	11.438
	CRR073305	Juvenile bud 3	15.045
	CRR073306	Third green 1	2.960
	CRR073307	Third green 2	3.574
	CRR073308	Third green 3	3.562
	CRR073309	Second white 1	4.566
	CRR073310	Second white 2	4.441
	CRR073311	Second white 3	4.008
	CRR073312	Silver flowering 1	3.790
	CRR073313	Silver flowering 2	3.412
	CRR073314	Silver flowering 3	2.969
	CRR073315	Gold flowering 1	7.352
	CRR073316	Gold flowering 2	12.197
	CRR073317	Gold flowering 3	7.472
	CRR073318	Tawny withering 1	15.498
	CRR073319	Tawny withering 2	14.790
	CRR073320	Tawny withering 3	15.580