Gene detail

Detail information of GWHGAAZE013356

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009779032.1	3.26297E-89	PREDICTED: transcription factor bHLH75-like [Nicotiana sylvestris]
Swissprot	tr\|A4D998\|BH075_ARATH	9E-52	Transcription factor bHLH75
trEMBL	tr\|K4BNN7\|K4BNN7_SOLLC	4E-78	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc04g007300.2.1}
TAIR10	AT1G25330.1	5E-43	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	101346535	101348476	+
GWHAAZE00000003	mRNA	101346535	101348476	+
GWHAAZE00000003	exon	101346535	101346925	+
GWHAAZE00000003	exon	101347303	101347425	+
GWHAAZE00000003	exon	101347580	101347645	+
GWHAAZE00000003	exon	101347776	101347844	+
GWHAAZE00000003	exon	101347987	101348076	+
GWHAAZE00000003	exon	101348297	101348476	+
GWHAAZE00000003	five_prime_UTR	101346535	101346604	+
GWHAAZE00000003	CDS	101346605	101346925	+
GWHAAZE00000003	CDS	101347303	101347425	+
GWHAAZE00000003	CDS	101347580	101347645	+
GWHAAZE00000003	CDS	101347776	101347844	+
GWHAAZE00000003	CDS	101347987	101348076	+
GWHAAZE00000003	CDS	101348297	101348476	+

Transcript Sequence
>GWHTAAZE013370 TCTAGAGTACTTAATTGGATACATATAACTAACCTGGAAAGTTTGTGACGAGGGAACTCAAAAACATCACATGGAACAACTAAACAACAACAGCATAAGTTCATTGGACAACTTCACCTCCAACGTTAATGGATTCATTCCTTTGTCCAATGACAGCTTCTGTGATTTTCATCATCATCAACGGCCTCAGATTACTTTCAATGAAACCTCTTTCAATCCTGACGGTCCATTTTATGATCCAGCAGTGCTTTCTTATTTCTTGCCAACCTCCGACGAAGGTCCCAGCAGCCATGAACCCAATATCATCATCAAGCCCATATGTGAATCAGAAAGCTTGATCAAGTCATCTCCTCCAATTTTTCTAGATAATAACAAGTCTCATAGAAATTATAACAGTGGAGGGAAAAAGAGAAAGAGAAACAATGAAAGATCGGAGGTGGAGAAGCCAAGAGAGGTTGTTCATGTGAGAGCAAGGAGAGGCCAAGCTACCGATAGCCACAGTTTGGCTGAAAGGTTAAGAAGGGAGAAAATAAATGAAAAGTTAAGAAGCTTGCAAGACCTTGTTCCAGGGTGTTACAAGACAATGGGAATGGCAGTAATGTTGGATGTAATAATCAACTATGTTCGATCACTTCAAAATCAAATTGAGTTTCTCTCAATGAAGCTTTCAGCGGCAAGTATGTTCTTCGACTTCAACTCATCAGAAATGGATGCTTTGGAAGCAATGCAGGCCAGTGCGGGAACAAATGGGTATGAAGCACAAGTGACGGAGAGGATGGTAGGAGAAGGGTATGGAGGGTTTCCTCAGTTTCAATCAACATGGCCTCTTTGATCATCATCATCATCATCATCATCATCATATATATACATCTATATATATCTATTTAAATGACATTGCCGTTTGTGTTACCAAAACTAA

Network for GWHGAAZE013356

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	142	189	6.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.483
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	43.516
	SRR3591711	White flower	24.477
	SRR3591712	Green floral bud	21.433
	SRR3591713	Yellow flower	26.484
SRP173429	SRR8316895	Juvenile bud stage	10.256
	SRR8316896	Juvenile bud stage	14.251
	SRR8316897	Juvenile bud stage	6.613
	SRR8316894	Third green stage	7.030
	SRR8316900	Third green stage	18.961
	SRR8316901	Third green stage	20.335
	SRR8316898	Complete white stage	6.690
	SRR8316899	Complete white stage	12.818
	SRR8316903	Complete white stage	8.513
	SRR8316902	Silver flowering stage	6.942
	SRR8316904	Silver flowering stage	49.525
	SRR8316905	Silver flowering stage	6.572
	SRR8316906	Gold flowering stage	15.514
	SRR8316907	Gold flowering stage	12.069
	SRR8316908	Gold flowering stage	25.224
SRP132670	SRR6706286	Control	23.343
	SRR6706287	Light intensity 50%	22.982
	SRR6706288	Light intensity 20%	19.452
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.764
	CNS0095593	Slightly white alabastrum(diploid) 2	10.869
	CNS0095594	Slightly white alabastrum(diploid) 3	12.430
	CNS0095595	Whole white alabastrum(diploid) 2	7.486
	CNS0095596	Whole white alabastrum(diploid) 3	17.407
	CNS0095597	Whole white alabastrum(diploid) 4	8.333
	CNS0095598	Silvery flower (diploied) 1	8.841
	CNS0095599	Silvery flower (diploied) 2	17.915
	CNS0095600	Silvery flower (diploied) 3	12.077
	CNS0095601	Golden flower (diploid) 1	8.544
	CNS0095602	Golden flower (diploid) 2	6.945
	CNS0095603	Golden flower (diploid) 3	8.871
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.155
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.837
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.272
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.158
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.487
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.039
	CNS0095610	Silvery flower (tetraploid) 1	32.863
	CNS0095611	Silvery flower (tetraploid) 2	13.622
	CNS0095612	Silvery flower (tetraploid) 3	17.584
	CNS0095613	Golden flower (tetraploid) 1	4.458
	CNS0095614	Golden flower (tetraploid) 2	42.667
	CNS0095615	Golden flower (tetraploid) 3	35.966
CRA001975	CRR073297	Stem 1	2.551
	CRR073298	Stem 2	1.478
	CRR073299	Stem 3	1.548
	CRR073300	Leaf 1	5.513
	CRR073301	Leaf 2	1.710
	CRR073302	Leaf 3	2.810
	CRR073303	Juvenile bud 1	4.878
	CRR073304	Juvenile bud 2	5.548
	CRR073305	Juvenile bud 3	3.269
	CRR073306	Third green 1	3.697
	CRR073307	Third green 2	13.555
	CRR073308	Third green 3	24.001
	CRR073309	Second white 1	2.590
	CRR073310	Second white 2	6.657
	CRR073311	Second white 3	1.463
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	1.018
	CRR073314	Silver flowering 3	0.255
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.329
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.005