Gene detail

Detail information of GWHGAAZE013340

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010689928.1	6.5594E-35	PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Beta vulgaris subsp. vulgaris]
Swissprot	tr\|Q84K11\|PPP5_SOLLC	3E-35	Serine/threonine-protein phosphatase 5
trEMBL	tr\|A0A061DJS3\|A0A061DJS3_THECC	7E-35	Phosphatase 5.2 isoform 1 {ECO:0000313\|EMBL:EOX92964.1}
TAIR10	AT2G42810.2	2E-28	protein phosphatase 5.2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	101058730	101061516	+
GWHAAZE00000003	mRNA	101058730	101061516	+
GWHAAZE00000003	exon	101061240	101061516	+
GWHAAZE00000003	exon	101058730	101058973	+
GWHAAZE00000003	five_prime_UTR	101058730	101058762	+
GWHAAZE00000003	CDS	101058763	101058973	+
GWHAAZE00000003	CDS	101061240	101061250	+
GWHAAZE00000003	three_prime_UTR	101061251	101061516	+

Transcript Sequence
>GWHTAAZE013354 CATCTCTCTAGAGGAAATCATGAAAGCAAGAGCATGAACAGAATATATGGTTTTGCGGGGGAGGTGAGATCGAAGTTGAGTGAATCATTCGTGGAACTCTTTGCTGAAGTGTTCTGCTGTTTACCTTTGGCTCATGTAATAAACAAAAAAAAAATTGTGGTTCATGGAGGTCTTTTTAGTGTTGACGGGGTGACGCTATCTCACATTAGGGCGATTAATCGTTTTTCTGAGCCACCCGAGGAAGCCGCATCCTGATGTCAAGCCAATGGCATACTCCAACTTCTTCTTCCGAATGTTCTCTTAACTCTCTTTCTATGGCTGACTCTTTGGACTGCTAATTATGCACACAAGCGCTCGTGGATTGGCCGTACTGAGCGCCAAAAGTTATAGCGCAAGCCTCTTAGAAGAAATGGTGGCTTTGTTTATTTTTCCTTTGGCAGTGTGCCCACATGTAATGTATACAGAGAGCAGAAAACGCAACTAACATTGTTACAAAGATATATATGCATACAGAAAATTTC

Network for GWHGAAZE013340

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04460	PPP5C	MAPK signaling pathway	map04010

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.811
	SRR3591706	second leaf	1.017
	SRR3591707	mature leaf	1.633
	SRR3591708	Shoot apex	3.505
	SRR3591709	Stem	1.836
	SRR3591710	White floral bud	0.458
	SRR3591711	White flower	0.789
	SRR3591712	Green floral bud	1.844
	SRR3591713	Yellow flower	0.153
SRP173429	SRR8316895	Juvenile bud stage	2.416
	SRR8316896	Juvenile bud stage	3.394
	SRR8316897	Juvenile bud stage	0.559
	SRR8316894	Third green stage	0.680
	SRR8316900	Third green stage	1.482
	SRR8316901	Third green stage	1.169
	SRR8316898	Complete white stage	0.251
	SRR8316899	Complete white stage	1.507
	SRR8316903	Complete white stage	2.012
	SRR8316902	Silver flowering stage	0.259
	SRR8316904	Silver flowering stage	0.613
	SRR8316905	Silver flowering stage	0.184
	SRR8316906	Gold flowering stage	1.573
	SRR8316907	Gold flowering stage	0.704
	SRR8316908	Gold flowering stage	1.037
SRP132670	SRR6706286	Control	1.193
	SRR6706287	Light intensity 50%	1.016
	SRR6706288	Light intensity 20%	1.251
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.232
	CNS0095593	Slightly white alabastrum(diploid) 2	3.544
	CNS0095594	Slightly white alabastrum(diploid) 3	2.197
	CNS0095595	Whole white alabastrum(diploid) 2	1.842
	CNS0095596	Whole white alabastrum(diploid) 3	0.849
	CNS0095597	Whole white alabastrum(diploid) 4	1.403
	CNS0095598	Silvery flower (diploied) 1	1.721
	CNS0095599	Silvery flower (diploied) 2	1.887
	CNS0095600	Silvery flower (diploied) 3	0.512
	CNS0095601	Golden flower (diploid) 1	0.906
	CNS0095602	Golden flower (diploid) 2	0.879
	CNS0095603	Golden flower (diploid) 3	1.199
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.346
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.286
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.269
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.381
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.980
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.934
	CNS0095610	Silvery flower (tetraploid) 1	0.460
	CNS0095611	Silvery flower (tetraploid) 2	0.646
	CNS0095612	Silvery flower (tetraploid) 3	0.423
	CNS0095613	Golden flower (tetraploid) 1	0.740
	CNS0095614	Golden flower (tetraploid) 2	0.778
	CNS0095615	Golden flower (tetraploid) 3	1.529
CRA001975	CRR073297	Stem 1	3.830
	CRR073298	Stem 2	1.241
	CRR073299	Stem 3	0.174
	CRR073300	Leaf 1	2.607
	CRR073301	Leaf 2	1.836
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.209
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.067
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.139
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.247
	CRR073319	Tawny withering 2	2.012
	CRR073320	Tawny withering 3	1.129