Gene detail

Detail information of GWHGAAZE013331

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP29218.1	0	hypothetical protein JCGZ_16607 [Jatropha curcas]
Swissprot	tr\|Q9ZQA8\|PABP7_ARATH	0	Polyadenylate-binding protein 7
trEMBL	tr\|A0A067K2I6\|A0A067K2I6_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP29218.1}
TAIR10	AT2G36660.1	1E-144	poly(A) binding protein 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	100895854	100903124	-
GWHAAZE00000003	mRNA	100895854	100903124	-
GWHAAZE00000003	exon	100902938	100903124	-
GWHAAZE00000003	exon	100901718	100901836	-
GWHAAZE00000003	exon	100901397	100901590	-
GWHAAZE00000003	exon	100901024	100901283	-
GWHAAZE00000003	exon	100900818	100900924	-
GWHAAZE00000003	exon	100900235	100900424	-
GWHAAZE00000003	exon	100899489	100899784	-
GWHAAZE00000003	exon	100898278	100898430	-
GWHAAZE00000003	exon	100897417	100897614	-
GWHAAZE00000003	exon	100895854	100896099	-
GWHAAZE00000003	CDS	100902938	100903124	-
GWHAAZE00000003	CDS	100901718	100901836	-
GWHAAZE00000003	CDS	100901397	100901590	-
GWHAAZE00000003	CDS	100901024	100901283	-
GWHAAZE00000003	CDS	100900818	100900924	-
GWHAAZE00000003	CDS	100900235	100900424	-
GWHAAZE00000003	CDS	100899489	100899784	-
GWHAAZE00000003	CDS	100898278	100898430	-
GWHAAZE00000003	CDS	100897417	100897614	-
GWHAAZE00000003	CDS	100895854	100896099	-

Transcript Sequence
>GWHTAAZE013345 ATGGCGGTTCCTCCGACGGTCACCGCCGCACTCTACGTCGGCGATCTTCACCCTGACGTCACCGACGATCACCTTTTCGAGGCCTTCTCCGAGTTCAAGAGCCTCGCCTCCGTTCGTATCTGCCGTGACCTATCAACCGGCCGCTCACTCTGTTACGGTTACGTCAACTTTGACTCTCCTCAAGATGCCGTTCGTGCTATTGAGGTGAAAAATCACTCAACACTGAACGGAAAAGTGATACGGGTTATGTGGGCGAATCGAGATGCAGATGGGAGAAAAAGTGGAGTGGGCAATGTGTTTGTCAAGAATTTAAGTGAGTCTATTGATAATGTAAAGCTTCAAGAATTGTTTCATAAATTCGGAGAGATTTTGTCTTGCAAAGTTGCTATGTTTGAGGATGGAAAGAGCAAAGGGTATGGCTTCGTCCAGTTTGATTCTGATGAATCAGCAAATTCTGCTATTGAGAAGCTTAATGGCAGCACTGTTGATGGGAAGCAAATGTATGTTGGCAAATTTGTGAAGAAGAGTGAACGTGCTTTATCTAGTCCTGATGTTAAATATACAAATCTGTACATGAAGAATTTGGATTCAGACGTCACAGAAGATTTTCTTATGGAAAAGTTCTCTGAATTTGGAAAAATTGTTAGCTTGGTTATATCAAAGGATGACATTGGAGCCTCAAGAGGTTTTGGATTTGTGAACTTCGAGAACCCTGATGATGCAAGGAAGGCAATGGAAACTATGAACGGATTGCAACTTGGATCGAAAGTGCTGTATGTAGCTAGGGCACAAAAGAAAGCTGAGCGAGAGCAAATCTTGCGGCGTCAGTTTGAGGACCAAAGGAAGGAGCAGATGTTGAAATACCAGGCCTCGAACGTCTATGTCAAAAACATTGATGATGATGTCACCGATGAAGAGCTGCGTGAGCACTTCAGTCAGTGTGGTACTATCACTTCGGCAAAACTTATGCGAGATGAGAAAGGAAGGAGTAAGGGATTTGGATTTGTTTGCTTCTCCATGCCTGAAGAGGCCAATAAAGCTGTGATCACTTTCCATGGACAAATGTTTCACCGAAAGCCATTATACGTGGCCATTGCTCAAAGGAGAGAGGAGAGACTAGCACAGTTACAGCTGCAGTACGCACAGCGCATGGCTGGACTAGCGGGACCCTCGGCCATTATTCCTGGTGGTGCCTATCCTCCTTTTTACTACGCAGCTCCACCTGGTATTGTTTCACCGGTACCTCCACGGCCAGGTCTTATATATCAGCCTTTGGGCTTTAGGCCAGGATGGAGGGCTAATGGCTTTGCTTCCCCAACGAGACCAGTTTTTCAACCATCTCCAATTCCCATAATTCCAAATCCTCCGAGACCAATTAGGCAAAACAGGGGAAGGATGAACGGGAATATGCATCCACAGGGTGGTGTTCCTGCACTCTCATATGTGCCAGCATTGCAACAATCCGCTCAATCATTAACTTCACCAAGAGATTCAGGCAATCTTCAGCGTGGAGTACAGGGGAAGTATTTCCCAGATAGGCGGTTGCGTGAGATGAGCAAAGGAAGTGTAGTATCCTCTGCTGCTGCTTCAAATTTTGGGGGTGAAGGTTCAGAGTTGCTAAGCAGCATGCTTGCTGCTGCTCCCCCTGAGCAGCAGAAACGTATACTAGGGGAGCGCCTCTACCCCCTTGTCAACCAACACAAGCACCCTATCGTATTTTTTTTTCTTTCTTCGAACGAGTTGCAGCCGGATCTTGCCGCAAAGATAACAGGAATGCTATTGGAGATGGACAACTCAGAACTGCTTCTGTTATTAGAGTCACCACAGTTGCTGGCTTCAAAGGTGGATGAAGCCGTGCAGGTGCTCAACCTATCTAAGACCAAACTATCATCGAGCCAAGACGCACTTCATCCTAGTAGTTACCTCTCTGCCGAGGTCACTGTTAACTGA

Network for GWHGAAZE013331

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	11	81	2.20E-17
PF00076.23	RRM_1	99	167	1.10E-19
PF00076.23	RRM_1	190	258	1.80E-20
PF00076.23	RRM_1	293	361	1.70E-19
PF00658.19	PABP	542	622	2.40E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13126	PABPC	RNA transport	map03013
		mRNA surveillance pathway	map03015
		RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003723	molecular_function	RNA binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.005
	SRR3591706	second leaf	2.193
	SRR3591707	mature leaf	1.315
	SRR3591708	Shoot apex	5.083
	SRR3591709	Stem	3.689
	SRR3591710	White floral bud	8.394
	SRR3591711	White flower	1.817
	SRR3591712	Green floral bud	50.400
	SRR3591713	Yellow flower	0.446
SRP173429	SRR8316895	Juvenile bud stage	53.626
	SRR8316896	Juvenile bud stage	92.596
	SRR8316897	Juvenile bud stage	36.104
	SRR8316894	Third green stage	26.242
	SRR8316900	Third green stage	47.440
	SRR8316901	Third green stage	58.715
	SRR8316898	Complete white stage	0.751
	SRR8316899	Complete white stage	4.337
	SRR8316903	Complete white stage	2.194
	SRR8316902	Silver flowering stage	0.671
	SRR8316904	Silver flowering stage	1.110
	SRR8316905	Silver flowering stage	0.287
	SRR8316906	Gold flowering stage	0.959
	SRR8316907	Gold flowering stage	1.514
	SRR8316908	Gold flowering stage	1.015
SRP132670	SRR6706286	Control	21.109
	SRR6706287	Light intensity 50%	20.151
	SRR6706288	Light intensity 20%	18.097
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	50.708
	CNS0095593	Slightly white alabastrum(diploid) 2	25.985
	CNS0095594	Slightly white alabastrum(diploid) 3	63.389
	CNS0095595	Whole white alabastrum(diploid) 2	37.542
	CNS0095596	Whole white alabastrum(diploid) 3	41.433
	CNS0095597	Whole white alabastrum(diploid) 4	31.616
	CNS0095598	Silvery flower (diploied) 1	2.401
	CNS0095599	Silvery flower (diploied) 2	2.469
	CNS0095600	Silvery flower (diploied) 3	2.605
	CNS0095601	Golden flower (diploid) 1	2.472
	CNS0095602	Golden flower (diploid) 2	3.706
	CNS0095603	Golden flower (diploid) 3	3.518
	CNS0095604	Slightly white alabastrum(tetraploid) 1	62.677
	CNS0095605	Slightly white alabastrum(tetraploid) 2	60.660
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.396
	CNS0095607	Whole white alabastrum(tetraploid) 1	66.175
	CNS0095608	Whole white alabastrum(tetraploid) 2	59.532
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.767
	CNS0095610	Silvery flower (tetraploid) 1	1.770
	CNS0095611	Silvery flower (tetraploid) 2	2.421
	CNS0095612	Silvery flower (tetraploid) 3	3.503
	CNS0095613	Golden flower (tetraploid) 1	0.410
	CNS0095614	Golden flower (tetraploid) 2	1.010
	CNS0095615	Golden flower (tetraploid) 3	0.471
CRA001975	CRR073297	Stem 1	56.242
	CRR073298	Stem 2	48.428
	CRR073299	Stem 3	50.810
	CRR073300	Leaf 1	28.116
	CRR073301	Leaf 2	34.273
	CRR073302	Leaf 3	27.108
	CRR073303	Juvenile bud 1	11.521
	CRR073304	Juvenile bud 2	7.144
	CRR073305	Juvenile bud 3	3.048
	CRR073306	Third green 1	4.304
	CRR073307	Third green 2	3.126
	CRR073308	Third green 3	3.260
	CRR073309	Second white 1	1.456
	CRR073310	Second white 2	2.375
	CRR073311	Second white 3	0.907
	CRR073312	Silver flowering 1	1.344
	CRR073313	Silver flowering 2	1.823
	CRR073314	Silver flowering 3	1.084
	CRR073315	Gold flowering 1	5.376
	CRR073316	Gold flowering 2	5.153
	CRR073317	Gold flowering 3	3.002
	CRR073318	Tawny withering 1	2.784
	CRR073319	Tawny withering 2	4.875
	CRR073320	Tawny withering 3	3.266