Gene detail

Detail information of GWHGAAZE013245

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002278244.1	PREDICTED: primary amine oxidase [Vitis vinifera]
Swissprot	tr\|Q43077\|AMO_PEA	Primary amine oxidase (Precursor)
trEMBL	tr\|D7T6W4\|D7T6W4_VITVI	Amine oxidase {ECO:0000256\|RuleBase:RU000672}
TAIR10	AT1G31690.1	Copper amine oxidase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	99352745	99365339	-
GWHAAZE00000003	mRNA	99352745	99365339	-
GWHAAZE00000003	exon	99364927	99365339	-
GWHAAZE00000003	exon	99358673	99359054	-
GWHAAZE00000003	exon	99357193	99357306	-
GWHAAZE00000003	exon	99356540	99357072	-
GWHAAZE00000003	exon	99352745	99352922	-
GWHAAZE00000003	CDS	99364927	99365339	-
GWHAAZE00000003	CDS	99358673	99359054	-
GWHAAZE00000003	CDS	99357193	99357306	-
GWHAAZE00000003	CDS	99356540	99357072	-
GWHAAZE00000003	CDS	99352745	99352922	-

Transcript Sequence
>GWHTAAZE013259 ATGGAAGAGACCAATAAAGCCCTAGCCCTCGCACTTAAGTACCCACCATTTTTAATTTCCATCAAAAAGAGGGGGCTTGATTTAAATGAGGTGGTTTTCAGTGTATTTTCAATAGGGTGGTTTGGGGTTAACAGTGAAGAAGGGAATAAGAGGGTGGTGAGTTTGTTGAGTTTTTATAAAGAGGAGAGTGTTAATGTGTGGGTGAGGCCTATTGAAGGGATAAGGATAATTGTTGATCTTGATAACATGATGATTGTGGAGTACGATGATACTGAGGTTTTACCATTGCCTAAAGCTGAGGGGACTGATTATAGGGCTTCTCAAATGAAGCCTCCTTTTGTGGCTCAAACTAAGCCTATTTCTGTTGTTCAACCTCAGGGTCACACCTTCAAGATCAATGGCCAAGAAATAAGTTGGGCAAACTGGAAACTACATCTTCGATTCGACGTTCGAGCAGGCACCGTCATTTCTCTAGCATCAATTTTTGATGAAAAGGAAGGTAAGTACAGAAGCGTGAAATACAAAGGATACGTCTCCGAGATATTTGTGCCGTATATGGATCCGACTAACGAATGGTATGACCGGACCTTTTTTGACACTGGAGAATTCGGCACCGGTCTATCGGCCGTGCCCCTCCAACCATCAGATTGTCCACCAAACGCTGTCTTCATTGATGGGTATTATGCTAATCAAAATGGCGTTCCGGTGAAAATTTCTAATGTGTTTTGTGTGTTTGAACGGTATTCTGGTGATGTTGCCTGGCGGCACACTGAGATTGTTATTCCTGATCAAACGATAGCTGAGGTTAGACCGGAGGTTAATTTGGTAATTAGGATGGTTTCAACTGTCGGCAACTATGATTATATCTTTGATTGGGAGTTCAAGCAAAGTGGATCTATCAAAGTTGGGGTGGCTTTAAGTGGGATTGTAGAAGCAAAACCCACATTCTACACTCACACAGACCAAATAAAAGAAGACATTTATGGGACATTATTAGCTGAAAATACCATAGGTATAAACCATGATCACTACATTACCTATTGTCTTGACCTAGACATTGATGGTGAAGACAACTCTTTCGTTAAATCAAAGCTCAAAACTATGAGAACCCACGGGACCACCCCGAGGAAGAGTTATTGGACTGCAGTTAAAGAAATCCTAAAGACTGAATTGGAGGCTAGAATGAATTTAGACGAATCGGCTGATTTGTTAATGGTGAACCCCAATAAGAAGACTCAAGTGGGGAACTTGGTAGGGTACAAACTAATCCCCGGTTCTCCTGCAACTCCGCTTCTGACTGACGATGATTATCCCCAATTTCGAGCTTCTTTTACTAAGTATCAGGTCTGGGTGACACCGTATAACCGGTCAGAGGAATGGGCTGGTGGTTTGCATGTAGATCGGAGCCATGGGGATGACACATTGTATACTTGGACTAACAGGAATAGGGATATCCAAAACAAGGATTTGGTGTTATGGCACACACTAGGGTTTCATCATAACCCTTGCCAAGAAGATTTCCCAATAATGCCAACATTGAGTGGTGGGTTTGAGTTGAGACCTTTCAACTTTTTTGAAAGAAATGCTATCCTCAAACTAAAGCCTCTTGAACATGCATAG

Network for GWHGAAZE013245

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02728.17	Cu_amine_oxidN3	5	95	3.20E-17
PF01179.21	Cu_amine_oxid	121	534	1.50E-130

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00276	AOC3, AOC2, tynA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycine, serine and threonine metabolism	map00260
		Tyrosine metabolism	map00350
		Phenylalanine metabolism	map00360
		beta-Alanine metabolism	map00410
		Isoquinoline alkaloid biosynthesis	map00950
		Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

GO term	Ontology	Name
GO:0009308	biological_process	amine metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005507	molecular_function	copper ion binding
GO:0008131	molecular_function	primary amine oxidase activity
GO:0048038	molecular_function	quinone binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.485
	SRR3591707	mature leaf	0.818
	SRR3591708	Shoot apex	0.189
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.110
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.017
	SRR3591713	Yellow flower	0.168
SRP173429	SRR8316895	Juvenile bud stage	0.042
	SRR8316896	Juvenile bud stage	0.051
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.035
	SRR8316900	Third green stage	0.198
	SRR8316901	Third green stage	0.101
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.064
	SRR8316903	Complete white stage	0.385
	SRR8316902	Silver flowering stage	0.011
	SRR8316904	Silver flowering stage	0.027
	SRR8316905	Silver flowering stage	0.042
	SRR8316906	Gold flowering stage	0.774
	SRR8316907	Gold flowering stage	0.070
	SRR8316908	Gold flowering stage	0.357
SRP132670	SRR6706286	Control	0.016
	SRR6706287	Light intensity 50%	0.108
	SRR6706288	Light intensity 20%	0.006
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.110
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.017
	CNS0095596	Whole white alabastrum(diploid) 3	0.026
	CNS0095597	Whole white alabastrum(diploid) 4	0.323
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.066
	CNS0095600	Silvery flower (diploied) 3	0.072
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.036
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.050
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.028
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.028
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.053
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.095
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.063
	CNS0095613	Golden flower (tetraploid) 1	0.170
	CNS0095614	Golden flower (tetraploid) 2	0.221
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.120
	CRR073298	Stem 2	0.053
	CRR073299	Stem 3	0.144
	CRR073300	Leaf 1	0.096
	CRR073301	Leaf 2	0.145
	CRR073302	Leaf 3	0.153
	CRR073303	Juvenile bud 1	0.044
	CRR073304	Juvenile bud 2	0.037
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.015
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.010
	CRR073310	Second white 2	0.103
	CRR073311	Second white 3	0.002
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.179
	CRR073314	Silver flowering 3	0.023
	CRR073315	Gold flowering 1	0.124
	CRR073316	Gold flowering 2	0.119
	CRR073317	Gold flowering 3	0.311
	CRR073318	Tawny withering 1	2.032
	CRR073319	Tawny withering 2	5.119
	CRR073320	Tawny withering 3	0.596