Gene detail

Detail information of GWHGAAZE013230

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010267265.1	1.373E-102	PREDICTED: ras-related protein RABE1c-like [Nelumbo nucifera]
Swissprot	tr\|P28186\|RAE1C_ARATH	3E-95	Ras-related protein RABE1c
trEMBL	tr\|M7Z451\|M7Z451_TRIUA	8E-101	Uncharacterized protein {ECO:0000313\|EnsemblPlants:TRIUR3_21852-P1}
TAIR10	AT5G59840.1	2E-64	Ras-related small GTP-binding family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	99041883	99047813	+
GWHAAZE00000003	mRNA	99041883	99047813	+
GWHAAZE00000003	exon	99041883	99041955	+
GWHAAZE00000003	exon	99043064	99043136	+
GWHAAZE00000003	exon	99043224	99043324	+
GWHAAZE00000003	exon	99045826	99045923	+
GWHAAZE00000003	exon	99046022	99046084	+
GWHAAZE00000003	exon	99046801	99046893	+
GWHAAZE00000003	exon	99047492	99047813	+
GWHAAZE00000003	CDS	99041883	99041955	+
GWHAAZE00000003	CDS	99043064	99043136	+
GWHAAZE00000003	CDS	99043224	99043324	+
GWHAAZE00000003	CDS	99045826	99045923	+
GWHAAZE00000003	CDS	99046022	99046084	+
GWHAAZE00000003	CDS	99046801	99046893	+
GWHAAZE00000003	CDS	99047492	99047581	+
GWHAAZE00000003	three_prime_UTR	99047582	99047813	+

Transcript Sequence
>GWHTAAZE013244 ATGAAAGTTTTGAAGAATAAAAAAGATGCTGTACCTGGGCAGATACTGCCTCCCGGTATCGGTCCCTCACACAGAGTCGGAAAGAGTTGCCTATTATTGCGTTTCTCTGATGATTCTTTTACGACAAGTTTCATTACCACAATTGGAATTGATTTCAAAATTCGGACTATAGAGCTTGATGGAAAGCGCATTAAACTACAAATATGGGATACTGCTGGGCAGGAACGTTTCCGGACGATAACTACAGATATCAAGAACTGGATCAAGAATATAGAACAACATGCCTCAGATAACGTGAACAAGATACTAGTGGGTAACAAAGCTGACATGGATGAGAGCAAACGGGCTGTGCCAACCTCGCGTGGCCAGGCACTGGCGGATGAATATGGTATCAAATTTTTTGAGACAAGTGCGAAAACAAATTTCAATGTGGAACAAGTTTTCTTTTCCATTGCTAGAGACATAAAGCAAAGACTTGCTGAGAGTGACAGCAAACCAGAGGCCCCAACCATCAAAATCAGTAAACCCGACTCAGGCAAGGGCTCAACTTCCGCTCCAGAGAAAACGGCATCAGCATGCTGCACTTCATAGATGATAAATGGTAGCCTGTGCACGCAAGTCGAGGCACGCACCTCATCATTATAGTATTTTAAAACTCAATGGGTGATGTATTTTCTTCCTTGATCTGAAGGGAGGGCAATATTTTGAATTATTTTACATGTGGGGATATACATGTTATTACCTTCGAACACTTGTTTTAGTTTATATAAACCTAATTTACCAGTTCTGTTCAAAACTGATCGTAATACTTTGGTACGGAGTG

Network for GWHGAAZE013230

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	24	82	6.40E-22
PF00071.23	Ras	83	156	1.00E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07901	RAB8A, MEL	AMPK signaling pathway	map04152
		Endocytosis	map04144
		Autophagy - animal	map04140
		Tight junction	map04530
		Pancreatic secretion	map04972

Gene Ontology

GO term	Ontology	Name
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	93.780
	SRR3591706	second leaf	43.742
	SRR3591707	mature leaf	55.539
	SRR3591708	Shoot apex	65.158
	SRR3591709	Stem	117.120
	SRR3591710	White floral bud	112.199
	SRR3591711	White flower	155.994
	SRR3591712	Green floral bud	90.678
	SRR3591713	Yellow flower	144.422
SRP173429	SRR8316895	Juvenile bud stage	59.696
	SRR8316896	Juvenile bud stage	75.756
	SRR8316897	Juvenile bud stage	41.251
	SRR8316894	Third green stage	30.890
	SRR8316900	Third green stage	87.240
	SRR8316901	Third green stage	98.052
	SRR8316898	Complete white stage	82.868
	SRR8316899	Complete white stage	186.233
	SRR8316903	Complete white stage	114.131
	SRR8316902	Silver flowering stage	109.212
	SRR8316904	Silver flowering stage	119.145
	SRR8316905	Silver flowering stage	57.254
	SRR8316906	Gold flowering stage	179.879
	SRR8316907	Gold flowering stage	176.351
	SRR8316908	Gold flowering stage	200.533
SRP132670	SRR6706286	Control	135.375
	SRR6706287	Light intensity 50%	137.151
	SRR6706288	Light intensity 20%	135.265
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	104.306
	CNS0095593	Slightly white alabastrum(diploid) 2	121.276
	CNS0095594	Slightly white alabastrum(diploid) 3	105.600
	CNS0095595	Whole white alabastrum(diploid) 2	96.426
	CNS0095596	Whole white alabastrum(diploid) 3	67.128
	CNS0095597	Whole white alabastrum(diploid) 4	80.166
	CNS0095598	Silvery flower (diploied) 1	104.303
	CNS0095599	Silvery flower (diploied) 2	100.165
	CNS0095600	Silvery flower (diploied) 3	129.925
	CNS0095601	Golden flower (diploid) 1	87.963
	CNS0095602	Golden flower (diploid) 2	123.416
	CNS0095603	Golden flower (diploid) 3	122.947
	CNS0095604	Slightly white alabastrum(tetraploid) 1	73.528
	CNS0095605	Slightly white alabastrum(tetraploid) 2	67.209
	CNS0095606	Slightly white alabastrum(tetraploid) 3	103.620
	CNS0095607	Whole white alabastrum(tetraploid) 1	64.677
	CNS0095608	Whole white alabastrum(tetraploid) 2	62.148
	CNS0095609	Whole white alabastrum(tetraploid) 3	68.485
	CNS0095610	Silvery flower (tetraploid) 1	140.853
	CNS0095611	Silvery flower (tetraploid) 2	117.276
	CNS0095612	Silvery flower (tetraploid) 3	121.273
	CNS0095613	Golden flower (tetraploid) 1	120.018
	CNS0095614	Golden flower (tetraploid) 2	116.018
	CNS0095615	Golden flower (tetraploid) 3	141.168
CRA001975	CRR073297	Stem 1	72.934
	CRR073298	Stem 2	70.024
	CRR073299	Stem 3	69.341
	CRR073300	Leaf 1	91.478
	CRR073301	Leaf 2	96.881
	CRR073302	Leaf 3	84.439
	CRR073303	Juvenile bud 1	89.997
	CRR073304	Juvenile bud 2	81.446
	CRR073305	Juvenile bud 3	102.385
	CRR073306	Third green 1	135.445
	CRR073307	Third green 2	146.474
	CRR073308	Third green 3	126.249
	CRR073309	Second white 1	90.788
	CRR073310	Second white 2	86.269
	CRR073311	Second white 3	77.106
	CRR073312	Silver flowering 1	76.509
	CRR073313	Silver flowering 2	60.856
	CRR073314	Silver flowering 3	64.569
	CRR073315	Gold flowering 1	69.466
	CRR073316	Gold flowering 2	95.313
	CRR073317	Gold flowering 3	67.177
	CRR073318	Tawny withering 1	104.657
	CRR073319	Tawny withering 2	136.212
	CRR073320	Tawny withering 3	99.103