Gene detail

Detail information of GWHGAAZE013108

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP11271.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8W1K8\|MUT11_CHLRE	6E-15	Protein Mut11
trEMBL	tr\|A0A068US83\|A0A068US83_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_53 {ECO:0000313\|EMBL:CDP11271.1}
TAIR10	AT2G37670.1	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	96912612	96917947	+
GWHAAZE00000003	mRNA	96912612	96917947	+
GWHAAZE00000003	exon	96912612	96913555	+
GWHAAZE00000003	exon	96914078	96914555	+
GWHAAZE00000003	exon	96914922	96915012	+
GWHAAZE00000003	exon	96915396	96915553	+
GWHAAZE00000003	exon	96915998	96916049	+
GWHAAZE00000003	exon	96916441	96916523	+
GWHAAZE00000003	exon	96916635	96916728	+
GWHAAZE00000003	exon	96917253	96917947	+
GWHAAZE00000003	CDS	96912612	96913555	+
GWHAAZE00000003	CDS	96914078	96914555	+
GWHAAZE00000003	CDS	96914922	96915012	+
GWHAAZE00000003	CDS	96915396	96915553	+
GWHAAZE00000003	CDS	96915998	96916049	+
GWHAAZE00000003	CDS	96916441	96916523	+
GWHAAZE00000003	CDS	96916635	96916728	+
GWHAAZE00000003	CDS	96917253	96917947	+

Transcript Sequence
>GWHTAAZE013122 ATGATCAATTGGGATGGCCTAGGAGAGAACGAAGACGACGATGATCGCTTTTTTGAGTCCTACAATGTCTCATCAGGTTCTGATGATGGCGATGATGACTTTGAAGACAGCCGAATGTCTTTTGCCTCTGCAGTTTCTTCTTCCTCTTCATCGAGCGAAAAGTTTTGTCCATTTAAACCAACAACATCCCCAATGGTAGAAGATTACAACATGTGGATGGAGGAGCCCGGGTCCATTAAGGACCGCCGTAAGCGCCTCCTTCAAGGTATGGGCCTAACTAGCAATAAAAGCTTTTCTATTGCTAGCTTCAAGTTCAATAGAGTCGCATCAAGAAATCACCAACTTCAAGAAGAAACAACAAAAGTACCACCAACAGCAACAACACCACCACCAACAGCAACATCAACATCAAAACCCTTCCATCTTGAGCCCAAATCGACCATCTTGCTTGTCCGGTCTCAATCAGACAGTGACATTGCATCATTCTCAGTCAACGCGAAGAGAAGGAAAGAGGAACTAATTGGGGACATACCGAAACAGAAGCTAACCAGGACTTGCTCTCTGCTATTGGTGCCGTGCATGAACACATCGTCCCACTACGCAAATTCTGTACGAATGTCACCCGCATGGGCAAGGGAGAGACAGTCGGTGATGAACAGCCGTGCAGTTACGGAGATATTTTCTGACGATCAATTCAGTACGGTCTTCGTGATAAAGAACTTGGATACTGGGAAAGAGTTCGTCGTTGAAGAGGTCAGTGAAGACGGAATGTGGAATAAGCTTAATGATATTGAGACGGGGAAACAACTTACTATGGAGGAATTTGAGAAATCAGTCGGGTATTCGCCGGTTGTTAAGGATTTGATGCGCAGGGAAAATGCAGCTGGAACTGGTGATGATGGAAGGAAAGTCAATGCCAATAATTACTTCCAAAAGAGCTTCAGAACTCGACGTCCCAATGGGTTAAAGCTCGGCAACACGGCAAATCATGTAAAGAATTCACCGCTTTACATATGTGCCAAGAGATTCAAGCCCCACGAGGGCTCGATCTGGACCCTTAGATTTAGCCCAGATGCGCGTTTTTTGGCGAGCGCCGGTGAAGATACAGTAATCCACATTTGGGAGGTACAAGAATGTGAAGTTGCTTCAACAAGACCGCCCGATGATTTGAATGCCTCTGTGAATTCGACAACCCATCATCACCATCTTGCAAGGAATGGATCGGATCATCGGCCTCCACTGGCAGAGATAACGCCTTTGCCGTCAAGAAGAAAAGGGAAGATTTATAGTAAGAAGAAGGGAAATTCAATTCCGGATTATGTTCATGTGCCCGAGACTGTGTTTACACTTTTGGAAACACCGGTATGCTCGTTCAGAGGTCACCAGGATGATGTTTTGGACCTGTCTTGGTCAAGAACTCAGCTACTGCTTTCATCTTCAATGGACAAGACAGTTAGGCTATGGGACATGGAAACCAAGAGCTGTTTAAAGATGTTTGCTCACAGTGATTATGTGACATGTATACAATTTAATCCGGTAGATGATGATCAATTCATTAGTGGATCATTAGATGCAAAGGTTAGAATATGGAGTATATCAAATAGGCAAGTTGTGGATTGGACTGATCTTAATGAAATGGTTACAGCTGCCTCCTATACTCCTGATGGCCAGGGTGCTGTAGTTGGTTCACATAAAGGGATTTGTCGCTTCTATGATACATCAGGTGGAAAGCTAGAACAAAAAGATCAGATTGAACTTAAAAGTAGGAAGAAAAAGGCTCAACCAAATAAGATTACTGGTATTCAGTTTTCTCCGGAGAATCCATCTGAAGTTCTCGTTACTTCTGCTGACTCCAGGCTTAGAATTTTAGATGGATCACATCTTATACATAAATTTAGAGGTGTCAGAAATACCAGCAGCCAAATACTGGCTTCTTTCAGTCCAGATGGAAAATATGTCATAAGCCCAAGTGAAGATTCCCAAGTATATATATGGAAGTATGAAGTGCAACGAGGTACAAGTCGGAAAAGCACAATCACAACACACTCTCATGAACACTTCCAGTGTAGAGAAGTGTCGGTAGCAATTCCATGGCCTGGAAGTATCAAAACCGAGCCGCCAATTGTAGAAGTGCATTCGAAGAGGCACTCTAAGCGCTCGATCCAACAACCTCTCTCCGTGGGTTACGAGGAAACCTTGAGTAAGAGAAGTTTGCCGCCTTTGCCTAAGAAAAACAACAACATGCTAGAAAGAGCATCTAGTTGCCCAGACGAGGATTTATCTAAAGTATCTCGTACAGAATCTGAGATGGGTGTGGGAGAATCTTTCAGTTCCTCCTCCTCCTCCTCCTTTTCGGCAGCTTCGACATCAAATTCTTCAAGTAGATATACTTTGAGTTCACCGTCCCATAACACATCTCATTCTTGGTCTAATTGGTTTGATGGTGTTAGCCACGGTGGGAATACAATGCAAGCGACTGCGTGGGGTTTGGCCGTTGTGACTGCTGGGCTCGGAGGTGCGCTTAAGACTTATCAGAATTTCGGACTTCCGCTCAAGGTTAGCCGGCAGAGCCATCTCTTCAGAGACCTCACATAA

Network for GWHGAAZE013108

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	340	374	2.80E-05
PF00400.33	WD40	453	489	9.20E-07
PF00400.33	WD40	494	531	0.0072
PF00400.33	WD40	644	666	0.072

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.139
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.054
	SRR3591709	Stem	0.067
	SRR3591710	White floral bud	4.624
	SRR3591711	White flower	0.279
	SRR3591712	Green floral bud	3.557
	SRR3591713	Yellow flower	0.058
SRP173429	SRR8316895	Juvenile bud stage	0.199
	SRR8316896	Juvenile bud stage	1.114
	SRR8316897	Juvenile bud stage	1.004
	SRR8316894	Third green stage	0.608
	SRR8316900	Third green stage	2.830
	SRR8316901	Third green stage	2.538
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.058
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.134
	SRR8316905	Silver flowering stage	0.013
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.625
	SRR6706287	Light intensity 50%	1.725
	SRR6706288	Light intensity 20%	1.516
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.923
	CNS0095593	Slightly white alabastrum(diploid) 2	1.391
	CNS0095594	Slightly white alabastrum(diploid) 3	1.674
	CNS0095595	Whole white alabastrum(diploid) 2	2.418
	CNS0095596	Whole white alabastrum(diploid) 3	3.457
	CNS0095597	Whole white alabastrum(diploid) 4	3.790
	CNS0095598	Silvery flower (diploied) 1	0.014
	CNS0095599	Silvery flower (diploied) 2	0.520
	CNS0095600	Silvery flower (diploied) 3	0.101
	CNS0095601	Golden flower (diploid) 1	0.246
	CNS0095602	Golden flower (diploid) 2	0.154
	CNS0095603	Golden flower (diploid) 3	0.074
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.738
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.752
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.072
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.081
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.409
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.439
	CNS0095610	Silvery flower (tetraploid) 1	0.195
	CNS0095611	Silvery flower (tetraploid) 2	0.136
	CNS0095612	Silvery flower (tetraploid) 3	0.492
	CNS0095613	Golden flower (tetraploid) 1	0.252
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.659
CRA001975	CRR073297	Stem 1	0.846
	CRR073298	Stem 2	1.078
	CRR073299	Stem 3	0.294
	CRR073300	Leaf 1	1.719
	CRR073301	Leaf 2	1.854
	CRR073302	Leaf 3	0.739
	CRR073303	Juvenile bud 1	3.632
	CRR073304	Juvenile bud 2	4.023
	CRR073305	Juvenile bud 3	0.204
	CRR073306	Third green 1	1.690
	CRR073307	Third green 2	1.515
	CRR073308	Third green 3	1.097
	CRR073309	Second white 1	0.091
	CRR073310	Second white 2	0.203
	CRR073311	Second white 3	0.145
	CRR073312	Silver flowering 1	0.993
	CRR073313	Silver flowering 2	2.239
	CRR073314	Silver flowering 3	0.838
	CRR073315	Gold flowering 1	1.095
	CRR073316	Gold flowering 2	0.307
	CRR073317	Gold flowering 3	0.375
	CRR073318	Tawny withering 1	1.161
	CRR073319	Tawny withering 2	0.970
	CRR073320	Tawny withering 3	0.865