Gene detail

Detail information of GWHGAAZE013074

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP06570.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|O04015\|P5CS_ACTDE	Gamma-glutamyl phosphate reductase
trEMBL	tr\|A0A068UDC9\|A0A068UDC9_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313\|EMBL:CDP06570.1}
TAIR10	AT3G55610.1	delta 1-pyrroline-5-carboxylate synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	96339330	96351670	+
GWHAAZE00000003	mRNA	96339330	96351670	+
GWHAAZE00000003	exon	96339330	96339400	+
GWHAAZE00000003	exon	96340864	96340935	+
GWHAAZE00000003	exon	96341940	96342043	+
GWHAAZE00000003	exon	96342712	96342814	+
GWHAAZE00000003	exon	96343434	96343595	+
GWHAAZE00000003	exon	96344342	96344619	+
GWHAAZE00000003	exon	96345302	96345452	+
GWHAAZE00000003	exon	96346830	96346998	+
GWHAAZE00000003	exon	96347604	96347746	+
GWHAAZE00000003	exon	96347940	96348029	+
GWHAAZE00000003	exon	96348237	96348323	+
GWHAAZE00000003	exon	96348609	96348695	+
GWHAAZE00000003	exon	96348783	96348879	+
GWHAAZE00000003	exon	96349018	96349121	+
GWHAAZE00000003	exon	96349938	96350013	+
GWHAAZE00000003	exon	96350492	96350650	+
GWHAAZE00000003	exon	96350753	96350808	+
GWHAAZE00000003	exon	96351269	96351339	+
GWHAAZE00000003	exon	96351589	96351670	+
GWHAAZE00000003	five_prime_UTR	96339330	96339349	+
GWHAAZE00000003	CDS	96339350	96339400	+
GWHAAZE00000003	CDS	96340864	96340935	+
GWHAAZE00000003	CDS	96341940	96342043	+
GWHAAZE00000003	CDS	96342712	96342814	+
GWHAAZE00000003	CDS	96343434	96343595	+
GWHAAZE00000003	CDS	96344342	96344619	+
GWHAAZE00000003	CDS	96345302	96345452	+
GWHAAZE00000003	CDS	96346830	96346998	+
GWHAAZE00000003	CDS	96347604	96347746	+
GWHAAZE00000003	CDS	96347940	96348029	+
GWHAAZE00000003	CDS	96348237	96348323	+
GWHAAZE00000003	CDS	96348609	96348695	+
GWHAAZE00000003	CDS	96348783	96348879	+
GWHAAZE00000003	CDS	96349018	96349121	+
GWHAAZE00000003	CDS	96349938	96350013	+
GWHAAZE00000003	CDS	96350492	96350650	+
GWHAAZE00000003	CDS	96350753	96350808	+
GWHAAZE00000003	CDS	96351269	96351339	+
GWHAAZE00000003	CDS	96351589	96351670	+

Transcript Sequence
>GWHTAAZE013088 TTAAAACTATCGACAACACCATGGATCCTACTCGAGCATTCACGAAGAACGTCAAACGTGTCGTCTTCAAGGTAGGAACAGCTGTGGTTACACGAGATGATGGAAGGTTGGCAGTTGGAAGACTTGGAGCTATTTTTGAGCAGCTGGAAAAGCTAAACTCCCGAGGCTTTGAAGTAATTTTAGTGACTTCAGGTGCAGTTGGAGCTGGCCGCCAAAGGCTTAAGTACAGGAGATTGGTGAACAGCAGTTTTGCTGATCTCCAAAAACCACAACATGAACTTTGTGGTAAGGCTTGTGCAGCTGTTGGACAAAATGGTCTTATGGCGCTTTATGATACTTTATTCAGCCAGCTGGATGTGACGTCTTCACAACTTCTAGTCACAGATAATGATTTCAAGAATGCAGATTTCAGAGTGCAACTTTCTCAAACAGTGAACTCATTGTTGGCTCTGAGGAGTATTCCCATTTTTAATGAAAATGATGCAATTAGTACTAGGAGAGCTCCATATGAGGACTCGTCCGGTATATTTTGGGATAATGACAGCTTGGCAGCTTTACTAGCCACAGAACTAGATGCTGACCTTCTTGTGTTGTTAAGTGATGTGGAAGGCCTTTATACGGGCCCTCCTACCGATCCACGTTCAAAGCTAATTCATACATACATAAAAGAAAAACATGAAGCGTTAATAACATTTGGAGACAAGTCTAGGATGGGAAGAGGGGGAATGGATGCAAAAGTAAAAGCTGCTGTCACTGCTGCTTATGGCGGTACACCTGTAGTCATTGCGAGTGGTTTTGCGGCTAACAACATAATAAAAGTACTTAATGGAGAGCGTATTGGCACTCTCTTTCACAAAGACGCGCATTTGTGGGTCCCACTTACTGAAGTTGGCGCTCACGAGTTAGCAATTTCAGCAAGGCAATGTTCCAGACAACTTCAGACCCTATCTTCAGAAGATAGAAGGAAAATTTTGTTGGATGTTGCTGATGCACTTGAGAAAAATGAAAATTTTATATTGGCTGAAAATGAAGCTGATGTTGATTCTGCACGGGAAGCTGGATATGACGAGTCACTAGTATCTCGTTTAGCCTTGAAACCTGGGAAGGCAATTCAGATATCGTCAGATTGATATATATATATATATATTCTTGATGGAGTTCACCTTATTTTTCAGATTTCTAGTCTTGCAAAATCTACTCGAGTACTTGCTGACATGGAAGAACCCATTGGTCAAATTTTGAAGCGAACAGAACTTGCAGACGGACTCATCTTAGAGAAGACTTCATGTCCTTTGGGTGTTCTACTCATTATTTTTGAATCTCGACCCGATGCCTTAGTTCAGATAGCTTCACTAGCAATTCGAAGTGGGAATGGTCTACTGCTAAAAGGAGGGAAAGAAGCTAAGCGCTCAAATGCAATCTTGTACAAGGTAATAATCTCTGCCATCCCAGATACCGTTGGAAAAGGACTTATTGGACTACTGACTTCAAGAGAGGAGATTCCTGATTTGCTCAAGCTGGATGATGTTATAGATCTTGTGATTCCTAGAGGCAGCAATAAACTTGTTTCCCAGATAAAGAATTCGACAAAAATACCCGTTCTTGGTCATTCTGATGGAATTTGCCATGTTTATGTTGATAAGATGGCTAATATGGAGAAGGCAAAGCAAATTGTCCGGGACGCAAAGTTAGATTATCCTGCTGCCTGTAATGCTATGGAAACACTTCTTGTACACCAGGATTTGACTACTAATGGAGGTCTCCGAGACCTTGTAAGTGAACTCGAAAATGAAGGCGTTACCCTACATGGTGGACCGAGAGCAAGTTCTTTGTTAAATATTTTAGAGGCGAAAACATTCCATCACGAGTACAGTACGAGGGCGTGTGCAATTGAAATTGTTGATGATGTGAATGCTGCCATTGATCATATACATAAACATGGAAGGCATGTTGTTCGCATACTGATTGCATTGTTACAGAAGACTCTGAGGTTGCTGAACACTTCCTACGTTGGGATAAGTACGAGTAGGATTCATGCACGTGGTCCGGTAGGAGTCGAAGGGCTTCTAACAACACGATGGATTCTCAGAGGCAATGGTCAAATAGTGGACGGGGATAAAGGAGTCAATTACACCCACAAGAACCTTGCCCTTCACTCATAA

Network for GWHGAAZE013074

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00696.29	AA_kinase	12	257	8.30E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12657	ALDH18A1, P5CS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006561	biological_process	proline biosynthetic process
GO:0005737	cellular_component	cytoplasm
GO:0016491	molecular_function	oxidoreductase activity
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0004350	molecular_function	glutamate-5-semialdehyde dehydrogenase activity
GO:0003824	molecular_function	catalytic activity
GO:0004349	molecular_function	glutamate 5-kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.961
	SRR3591706	second leaf	0.694
	SRR3591707	mature leaf	0.168
	SRR3591708	Shoot apex	2.948
	SRR3591709	Stem	2.739
	SRR3591710	White floral bud	4.844
	SRR3591711	White flower	0.224
	SRR3591712	Green floral bud	28.536
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	4.341
	SRR8316896	Juvenile bud stage	10.580
	SRR8316897	Juvenile bud stage	6.267
	SRR8316894	Third green stage	4.160
	SRR8316900	Third green stage	23.181
	SRR8316901	Third green stage	19.012
	SRR8316898	Complete white stage	0.211
	SRR8316899	Complete white stage	0.936
	SRR8316903	Complete white stage	1.057
	SRR8316902	Silver flowering stage	0.293
	SRR8316904	Silver flowering stage	0.179
	SRR8316905	Silver flowering stage	0.086
	SRR8316906	Gold flowering stage	0.101
	SRR8316907	Gold flowering stage	0.035
	SRR8316908	Gold flowering stage	0.128
SRP132670	SRR6706286	Control	14.024
	SRR6706287	Light intensity 50%	13.842
	SRR6706288	Light intensity 20%	12.856
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.906
	CNS0095593	Slightly white alabastrum(diploid) 2	12.763
	CNS0095594	Slightly white alabastrum(diploid) 3	14.434
	CNS0095595	Whole white alabastrum(diploid) 2	50.503
	CNS0095596	Whole white alabastrum(diploid) 3	57.771
	CNS0095597	Whole white alabastrum(diploid) 4	61.944
	CNS0095598	Silvery flower (diploied) 1	1.105
	CNS0095599	Silvery flower (diploied) 2	1.948
	CNS0095600	Silvery flower (diploied) 3	0.370
	CNS0095601	Golden flower (diploid) 1	1.303
	CNS0095602	Golden flower (diploid) 2	0.693
	CNS0095603	Golden flower (diploid) 3	0.637
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.457
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.894
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.164
	CNS0095607	Whole white alabastrum(tetraploid) 1	94.608
	CNS0095608	Whole white alabastrum(tetraploid) 2	109.838
	CNS0095609	Whole white alabastrum(tetraploid) 3	56.161
	CNS0095610	Silvery flower (tetraploid) 1	0.385
	CNS0095611	Silvery flower (tetraploid) 2	0.349
	CNS0095612	Silvery flower (tetraploid) 3	0.592
	CNS0095613	Golden flower (tetraploid) 1	0.135
	CNS0095614	Golden flower (tetraploid) 2	0.124
	CNS0095615	Golden flower (tetraploid) 3	0.421
CRA001975	CRR073297	Stem 1	5.078
	CRR073298	Stem 2	5.877
	CRR073299	Stem 3	3.308
	CRR073300	Leaf 1	18.363
	CRR073301	Leaf 2	13.521
	CRR073302	Leaf 3	8.801
	CRR073303	Juvenile bud 1	11.708
	CRR073304	Juvenile bud 2	8.269
	CRR073305	Juvenile bud 3	2.167
	CRR073306	Third green 1	0.725
	CRR073307	Third green 2	0.539
	CRR073308	Third green 3	0.384
	CRR073309	Second white 1	0.110
	CRR073310	Second white 2	0.059
	CRR073311	Second white 3	0.081
	CRR073312	Silver flowering 1	0.398
	CRR073313	Silver flowering 2	1.183
	CRR073314	Silver flowering 3	0.591
	CRR073315	Gold flowering 1	0.495
	CRR073316	Gold flowering 2	0.004
	CRR073317	Gold flowering 3	0.364
	CRR073318	Tawny withering 1	0.664
	CRR073319	Tawny withering 2	0.491
	CRR073320	Tawny withering 3	0.863