Detail information of GWHGAAZE013027


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG11082.10Glycerol-3-phosphate acyltransferase 6 -like protein [Gossypium arboreum]
Swissprottr|O80437|GPAT6_ARATH0Glycerol-3-phosphate 2-O-acyltransferase 6
trEMBLtr|A0A068UDZ3|A0A068UDZ3_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313|EMBL:CDP06502.1}
TAIR10AT2G38110.10glycerol-3-phosphate acyltransferase 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9557103895576166+
GWHAAZE00000003mRNA9557103895576166+
GWHAAZE00000003exon9557103895571655+
GWHAAZE00000003exon9557530395576166+
GWHAAZE00000003CDS9557103895571655+
GWHAAZE00000003CDS9557530395576166+
Transcript Sequence

Network for GWHGAAZE013027

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12710.8HAD242028.90E-14
PF01553.22Acyltransferase2983901.20E-07
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K13508GPAT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerolipid metabolismmap00561
Glycerophospholipid metabolismmap00564

Gene Ontology

GO term OntologyName
GO:0016746molecular_functiontransferase activity, transferring acyl groups

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.322
SRR3591706second leaf277.561
SRR3591707mature leaf43.113
SRR3591708Shoot apex90.458
SRR3591709Stem5.798
SRR3591710White floral bud85.477
SRR3591711White flower219.985
SRR3591712Green floral bud28.155
SRR3591713Yellow flower170.329
SRP173429 SRR8316895Juvenile bud stage 23.139
SRR8316896Juvenile bud stage 23.168
SRR8316897Juvenile bud stage 10.311
SRR8316894Third green stage 7.520
SRR8316900Third green stage 22.606
SRR8316901Third green stage 21.425
SRR8316898Complete white stage 72.146
SRR8316899Complete white stage 16.239
SRR8316903Complete white stage 88.250
SRR8316902Silver flowering stage199.887
SRR8316904Silver flowering stage298.539
SRR8316905Silver flowering stage162.735
SRR8316906Gold flowering stage 314.712
SRR8316907Gold flowering stage 552.086
SRR8316908Gold flowering stage 301.543
SRP132670SRR6706286Control29.482
SRR6706287Light intensity 50%45.434
SRR6706288Light intensity 20%32.763
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.003
CNS0095593Slightly white alabastrum(diploid) 28.234
CNS0095594Slightly white alabastrum(diploid) 35.931
CNS0095595Whole white alabastrum(diploid) 26.090
CNS0095596Whole white alabastrum(diploid) 34.069
CNS0095597Whole white alabastrum(diploid) 46.017
CNS0095598Silvery flower (diploied) 113.428
CNS0095599Silvery flower (diploied) 211.565
CNS0095600Silvery flower (diploied) 375.146
CNS0095601Golden flower (diploid) 15.496
CNS0095602Golden flower (diploid) 251.719
CNS0095603Golden flower (diploid) 350.008
CNS0095604Slightly white alabastrum(tetraploid) 118.500
CNS0095605Slightly white alabastrum(tetraploid) 212.541
CNS0095606Slightly white alabastrum(tetraploid) 381.573
CNS0095607Whole white alabastrum(tetraploid) 17.604
CNS0095608Whole white alabastrum(tetraploid) 27.768
CNS0095609Whole white alabastrum(tetraploid) 326.686
CNS0095610Silvery flower (tetraploid) 189.383
CNS0095611Silvery flower (tetraploid) 233.686
CNS0095612Silvery flower (tetraploid) 383.956
CNS0095613Golden flower (tetraploid) 131.445
CNS0095614Golden flower (tetraploid) 257.948
CNS0095615Golden flower (tetraploid) 335.832
CRA001975CRR073297Stem 130.958
CRR073298Stem 229.289
CRR073299Stem 325.027
CRR073300Leaf 124.984
CRR073301Leaf 226.558
CRR073302Leaf 331.992
CRR073303Juvenile bud 112.431
CRR073304Juvenile bud 258.978
CRR073305Juvenile bud 315.190
CRR073306Third green 1627.873
CRR073307Third green 2416.967
CRR073308Third green 3479.386
CRR073309Second white 1788.887
CRR073310Second white 2595.057
CRR073311Second white 3550.910
CRR073312Silver flowering 1329.480
CRR073313Silver flowering 2239.259
CRR073314Silver flowering 3261.046
CRR073315Gold flowering 118.900
CRR073316Gold flowering 214.454
CRR073317Gold flowering 316.865
CRR073318Tawny withering 11.997
CRR073319Tawny withering 22.674
CRR073320Tawny withering 32.207