Gene detail

Detail information of GWHGAAZE013004

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011095020.1	1.12414E-87	PREDICTED: trihelix transcription factor GT-3b [Sesamum indicum]
Swissprot	tr\|O80450\|TGT3B_ARATH	1E-57	Trihelix transcription factor GT-3b
trEMBL	tr\|V7B301\|V7B301_PHAVU	4E-87	Uncharacterized protein {ECO:0000313\|EMBL:ESW12267.1}
TAIR10	AT2G38250.1	1E-37	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	95205054	95206481	-
GWHAAZE00000003	mRNA	95205054	95206481	-
GWHAAZE00000003	exon	95205054	95205533	-
GWHAAZE00000003	exon	95206233	95206481	-
GWHAAZE00000003	CDS	95206233	95206481	-
GWHAAZE00000003	CDS	95205054	95205533	-

Transcript Sequence
>GWHTAAZE013018 ATGACCGGTGTTAGTGTAGATATAGGACGAGGGGGTGGGGGTGGGGGTGGTGATAGATTTCCTCAATGGAGTGTTGAAGAGACAAGGGAATTGTTGATGGGTCGGGCCGAACTTGACACGAAATTTATGGAAACCAAACGGAACAAGTTTTTGTGGGAAATGATTTCTAATAGGATGAGGGAAAAGGGTTATAATCGGAGCTCCGACCAGTGCAAAAGCAAGTGGAAGAACCTTGTTACTCGATATAAGGGATATGAAACAATGGAGGATGAAAGTAAGCGCCAACGATGTCCATTTCACAGCGAGTTGCAATCGATTTTTGGGGCAAGGATGCTACAGATTGAAGACGAAAATGAAGATAGCGAAGGAGAGATTAAAGGAAGCGCTAAGAAGAAAAGAAAGATTAAAACCGGTTCGAGTGATAGTAGTACAACAAGTAATAATGTGAAAATTTTAAGGGAGATTTTAGAGGAATATATGAAGCAACAAGTGCAAATGGAGGTACAATGGATGAAAGCATATGAAGCAAGAGAAAAGGAGAGGAGAGTGAAGGAGATGGAATGGAGACAAACAATGGAGGCATTAGAGAATGAGAGGATAATGATGGAGAAGAGGTGGAGAGAAAGGGAAGAAGAAAGAAGGGTGAGAGAGGAAGCTAGGGCTGAGAGGAGAGATGCTTTGATTACAGCGTTGTTAAACAAGCTTACAAGAGAAGATCATAATAATTAG

Network for GWHGAAZE013004

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.7	Myb_DNA-bind_4	22	106	7.00E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.694
	SRR3591706	second leaf	0.402
	SRR3591707	mature leaf	0.166
	SRR3591708	Shoot apex	2.615
	SRR3591709	Stem	8.374
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.240
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.253
	SRR8316897	Juvenile bud stage	0.182
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.148
	SRR8316898	Complete white stage	0.104
	SRR8316899	Complete white stage	0.122
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.047
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.152
	SRR8316907	Gold flowering stage	0.096
	SRR8316908	Gold flowering stage	0.824
SRP132670	SRR6706286	Control	0.019
	SRR6706287	Light intensity 50%	0.097
	SRR6706288	Light intensity 20%	0.046
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.119
	CNS0095593	Slightly white alabastrum(diploid) 2	0.114
	CNS0095594	Slightly white alabastrum(diploid) 3	0.408
	CNS0095595	Whole white alabastrum(diploid) 2	0.766
	CNS0095596	Whole white alabastrum(diploid) 3	0.142
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.113
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.370
	CNS0095602	Golden flower (diploid) 2	0.027
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.039
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.084
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.058
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.003
	CNS0095611	Silvery flower (tetraploid) 2	0.004
	CNS0095612	Silvery flower (tetraploid) 3	0.039
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.011
CRA001975	CRR073297	Stem 1	0.436
	CRR073298	Stem 2	0.326
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.475
	CRR073301	Leaf 2	0.374
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.106
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.219
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.147
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	2.869
	CRR073319	Tawny withering 2	1.164
	CRR073320	Tawny withering 3	1.681